Gene : Phvul.010G116300 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1164
Name:  ? Phvul.010G116300 Secondary Identifier:  ? PAC:37143545
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G116300 0.5kb upstream 0.5kb upstream 2617 true Chr10: 39389924-39392540 Phaseolus vulgaris
Phvul.010G116300 0.5kb upstream 0.5kb upstream 500 false Chr10: 39392041-39392540 Phaseolus vulgaris
Phvul.010G116300 0.5kb downstream 0.5kb downstream 2617 true Chr10: 39389424-39392040 Phaseolus vulgaris
Phvul.010G116300 0.5kb downstream 0.5kb downstream 500 false Chr10: 39389424-39389923 Phaseolus vulgaris
Phvul.010G116300 1.0kb upstream 1.0kb upstream 3117 true Chr10: 39389924-39393040 Phaseolus vulgaris
Phvul.010G116300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 39392041-39393040 Phaseolus vulgaris
Phvul.010G116300 1.0kb downstream 1.0kb downstream 3117 true Chr10: 39388924-39392040 Phaseolus vulgaris
Phvul.010G116300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 39388924-39389923 Phaseolus vulgaris
Phvul.010G116300 2.0kb upstream 2.0kb upstream 4117 true Chr10: 39389924-39394040 Phaseolus vulgaris
Phvul.010G116300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 39392041-39394040 Phaseolus vulgaris
Phvul.010G116300 2.0kb downstream 2.0kb downstream 4117 true Chr10: 39387924-39392040 Phaseolus vulgaris
Phvul.010G116300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 39387924-39389923 Phaseolus vulgaris
Phvul.010G116300 5.0kb upstream 5.0kb upstream 7117 true Chr10: 39389924-39397040 Phaseolus vulgaris
Phvul.010G116300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 39392041-39397040 Phaseolus vulgaris
Phvul.010G116300 5.0kb downstream 5.0kb downstream 7117 true Chr10: 39384924-39392040 Phaseolus vulgaris
Phvul.010G116300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 39384924-39389923 Phaseolus vulgaris
Phvul.010G116300 10.0kb upstream 10.0kb upstream 12117 true Chr10: 39389924-39402040 Phaseolus vulgaris
Phvul.010G116300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 39392041-39402040 Phaseolus vulgaris
Phvul.010G116300 10.0kb downstream 10.0kb downstream 12117 true Chr10: 39379924-39392040 Phaseolus vulgaris
Phvul.010G116300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 39379924-39389923 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297206 5265 Fabidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.62826 0.0 5.28293   High
cufflinks 1.92376 0.0 6.1361   High
cufflinks 0.577056 0.0 2.0942   Low
cufflinks 1.43315 0.0 4.75524   High
cufflinks 0.770444 0.0 2.73435    
cufflinks 0.6218 0.0 2.24268    
cufflinks 0.565975 0.0 2.05436   Low
cufflinks 0.911188 0.0 3.15298    
cufflinks 0.730659 0.0 2.59285    
cufflinks 0.844897 0.0 2.96598    
cufflinks 0.942887 0.0 3.26904    

0 Strain