Gene : Phvul.006G042100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12854//PTHR12854:SF12 - ATAXIN 2-RELATED // SUBFAMILY NOT NAMED Genomic Order:  311
Name:  ? Phvul.006G042100 Secondary Identifier:  ? PAC:37172968
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ANAEROFRUCAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris ANAGLYCOLYSIS-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLUCONEO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-1042 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5723 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G042100 0.5kb upstream 0.5kb upstream 7565 true Chr06: 13314724-13322288 Phaseolus vulgaris
Phvul.006G042100 0.5kb upstream 0.5kb upstream 500 false Chr06: 13321789-13322288 Phaseolus vulgaris
Phvul.006G042100 0.5kb downstream 0.5kb downstream 7565 true Chr06: 13314224-13321788 Phaseolus vulgaris
Phvul.006G042100 0.5kb downstream 0.5kb downstream 500 false Chr06: 13314224-13314723 Phaseolus vulgaris
Phvul.006G042100 1.0kb upstream 1.0kb upstream 8065 true Chr06: 13314724-13322788 Phaseolus vulgaris
Phvul.006G042100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 13321789-13322788 Phaseolus vulgaris
Phvul.006G042100 1.0kb downstream 1.0kb downstream 8065 true Chr06: 13313724-13321788 Phaseolus vulgaris
Phvul.006G042100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 13313724-13314723 Phaseolus vulgaris
Phvul.006G042100 2.0kb upstream 2.0kb upstream 9065 true Chr06: 13314724-13323788 Phaseolus vulgaris
Phvul.006G042100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 13321789-13323788 Phaseolus vulgaris
Phvul.006G042100 2.0kb downstream 2.0kb downstream 9065 true Chr06: 13312724-13321788 Phaseolus vulgaris
Phvul.006G042100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 13312724-13314723 Phaseolus vulgaris
Phvul.006G042100 5.0kb upstream 5.0kb upstream 12065 true Chr06: 13314724-13326788 Phaseolus vulgaris
Phvul.006G042100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 13321789-13326788 Phaseolus vulgaris
Phvul.006G042100 5.0kb downstream 5.0kb downstream 12065 true Chr06: 13309724-13321788 Phaseolus vulgaris
Phvul.006G042100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 13309724-13314723 Phaseolus vulgaris
Phvul.006G042100 10.0kb upstream 10.0kb upstream 17065 true Chr06: 13314724-13331788 Phaseolus vulgaris
Phvul.006G042100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 13321789-13331788 Phaseolus vulgaris
Phvul.006G042100 10.0kb downstream 10.0kb downstream 17065 true Chr06: 13304724-13321788 Phaseolus vulgaris
Phvul.006G042100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 13304724-13314723 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299902 5265 Fabidae View MSA
124064647 5270 Rosid View MSA
123736552 5271 Pentapetalae View MSA
122787256 5272 Eudicot View MSA
122047595 5273 Angiosperm View MSA
121310768 5274 Embryophyte View MSA
123348174 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.21587 0.0 20.9134    
cufflinks 6.70266 0.0 25.3293    
cufflinks 4.58518 0.0 18.7289   Low
cufflinks 8.94709 0.0 32.1451   High
cufflinks 4.1284 0.0 15.2365   Low
cufflinks 5.45311 0.0 21.6825    
cufflinks 6.68443 0.0 25.1354    
cufflinks 8.6526 0.0 30.6865   High
cufflinks 8.52751 0.0 30.5552    
cufflinks 8.6131 0.0 31.0821   High
cufflinks 6.91111 0.0 26.0474    

0 Strain