Gene : Phvul.006G024100 P. vulgaris v2.1
Defline:  (1 of 2) 2.5.1.18//2.5.1.32 - Glutathione transferase / S-(hydroxyalkyl)glutathione lyase // 15-cis-phytoene synthase / PSase Genomic Order:  193
Name:  ? Phvul.006G024100 Secondary Identifier:  ? PAC:37173168
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CAROTENOID-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6475 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6842 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G024100 0.5kb upstream 0.5kb upstream 3475 true Chr06: 9727535-9731009 Phaseolus vulgaris
Phvul.006G024100 0.5kb upstream 0.5kb upstream 500 false Chr06: 9730510-9731009 Phaseolus vulgaris
Phvul.006G024100 0.5kb downstream 0.5kb downstream 3475 true Chr06: 9727035-9730509 Phaseolus vulgaris
Phvul.006G024100 0.5kb downstream 0.5kb downstream 500 false Chr06: 9727035-9727534 Phaseolus vulgaris
Phvul.006G024100 1.0kb upstream 1.0kb upstream 3975 true Chr06: 9727535-9731509 Phaseolus vulgaris
Phvul.006G024100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9730510-9731509 Phaseolus vulgaris
Phvul.006G024100 1.0kb downstream 1.0kb downstream 3975 true Chr06: 9726535-9730509 Phaseolus vulgaris
Phvul.006G024100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 9726535-9727534 Phaseolus vulgaris
Phvul.006G024100 2.0kb upstream 2.0kb upstream 4975 true Chr06: 9727535-9732509 Phaseolus vulgaris
Phvul.006G024100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9730510-9732509 Phaseolus vulgaris
Phvul.006G024100 2.0kb downstream 2.0kb downstream 4975 true Chr06: 9725535-9730509 Phaseolus vulgaris
Phvul.006G024100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 9725535-9727534 Phaseolus vulgaris
Phvul.006G024100 5.0kb upstream 5.0kb upstream 7975 true Chr06: 9727535-9735509 Phaseolus vulgaris
Phvul.006G024100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9730510-9735509 Phaseolus vulgaris
Phvul.006G024100 5.0kb downstream 5.0kb downstream 7975 true Chr06: 9722535-9730509 Phaseolus vulgaris
Phvul.006G024100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 9722535-9727534 Phaseolus vulgaris
Phvul.006G024100 10.0kb upstream 10.0kb upstream 12975 true Chr06: 9727535-9740509 Phaseolus vulgaris
Phvul.006G024100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9730510-9740509 Phaseolus vulgaris
Phvul.006G024100 10.0kb downstream 10.0kb downstream 12975 true Chr06: 9717535-9730509 Phaseolus vulgaris
Phvul.006G024100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 9717535-9727534 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122312069 5265 Fabidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.34326 0.0 9.89497    
cufflinks 2.5859 0.0 7.8575    
cufflinks 65.0557 0.0 177.689 High High
cufflinks 1.15416 0.0 3.88856    
cufflinks 3.55876 0.0 10.5294    
cufflinks 49.4579 0.0 131.749 High High
cufflinks 1.33319 0.0 4.36391    
cufflinks 1.35821 0.0 4.41916    
cufflinks 1.4321 0.0 4.65447    
cufflinks 0.92154 0.0 3.15882    
cufflinks 4.16429 0.0 12.0607    

0 Strain