Gene : Phvul.010G082200 P. vulgaris v2.1
Defline:  (1 of 1) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Genomic Order:  729
Name:  ? Phvul.010G082200 Secondary Identifier:  ? PAC:37143421
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6163 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G082200 0.5kb upstream 0.5kb upstream 9913 true Chr10: 22916683-22926595 Phaseolus vulgaris
Phvul.010G082200 0.5kb upstream 0.5kb upstream 500 false Chr10: 22916683-22917182 Phaseolus vulgaris
Phvul.010G082200 0.5kb downstream 0.5kb downstream 9913 true Chr10: 22917183-22927095 Phaseolus vulgaris
Phvul.010G082200 0.5kb downstream 0.5kb downstream 500 false Chr10: 22926596-22927095 Phaseolus vulgaris
Phvul.010G082200 1.0kb upstream 1.0kb upstream 10413 true Chr10: 22916183-22926595 Phaseolus vulgaris
Phvul.010G082200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 22916183-22917182 Phaseolus vulgaris
Phvul.010G082200 1.0kb downstream 1.0kb downstream 10413 true Chr10: 22917183-22927595 Phaseolus vulgaris
Phvul.010G082200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 22926596-22927595 Phaseolus vulgaris
Phvul.010G082200 2.0kb upstream 2.0kb upstream 11413 true Chr10: 22915183-22926595 Phaseolus vulgaris
Phvul.010G082200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 22915183-22917182 Phaseolus vulgaris
Phvul.010G082200 2.0kb downstream 2.0kb downstream 11413 true Chr10: 22917183-22928595 Phaseolus vulgaris
Phvul.010G082200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 22926596-22928595 Phaseolus vulgaris
Phvul.010G082200 5.0kb upstream 5.0kb upstream 14413 true Chr10: 22912183-22926595 Phaseolus vulgaris
Phvul.010G082200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 22912183-22917182 Phaseolus vulgaris
Phvul.010G082200 5.0kb downstream 5.0kb downstream 14413 true Chr10: 22917183-22931595 Phaseolus vulgaris
Phvul.010G082200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 22926596-22931595 Phaseolus vulgaris
Phvul.010G082200 10.0kb upstream 10.0kb upstream 19413 true Chr10: 22907183-22926595 Phaseolus vulgaris
Phvul.010G082200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 22907183-22917182 Phaseolus vulgaris
Phvul.010G082200 10.0kb downstream 10.0kb downstream 19413 true Chr10: 22917183-22936595 Phaseolus vulgaris
Phvul.010G082200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 22926596-22936595 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306052 5265 Fabidae View MSA
124067523 5270 Rosid View MSA
123738347 5271 Pentapetalae View MSA
122792138 5272 Eudicot View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.9592 0.0 51.6013   Low
cufflinks 24.398 0.0 63.27    
cufflinks 36.1053 0.0 95.273    
cufflinks 57.4566 0.0 156.497 High High
cufflinks 45.4077 0.0 121.496 High  
cufflinks 33.1452 0.0 86.9966 High  
cufflinks 39.133 0.0 103.867 High  
cufflinks 25.8386 0.0 67.1501    
cufflinks 49.2188 0.0 132.943 High  
cufflinks 22.9725 0.0 59.479   Low
cufflinks 65.6092 0.0 181.692 High High

0 Strain