Gene : Phvul.006G001800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12303:SF6 - UPF0586 PROTEIN C9ORF41 Genomic Order:  20
Name:  ? Phvul.006G001800 Secondary Identifier:  ? PAC:37172438
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G001800 0.5kb upstream 0.5kb upstream 8036 true Chr06: 512544-520579 Phaseolus vulgaris
Phvul.006G001800 0.5kb upstream 0.5kb upstream 500 false Chr06: 520080-520579 Phaseolus vulgaris
Phvul.006G001800 0.5kb downstream 0.5kb downstream 8036 true Chr06: 512044-520079 Phaseolus vulgaris
Phvul.006G001800 0.5kb downstream 0.5kb downstream 500 false Chr06: 512044-512543 Phaseolus vulgaris
Phvul.006G001800 1.0kb upstream 1.0kb upstream 8536 true Chr06: 512544-521079 Phaseolus vulgaris
Phvul.006G001800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 520080-521079 Phaseolus vulgaris
Phvul.006G001800 1.0kb downstream 1.0kb downstream 8536 true Chr06: 511544-520079 Phaseolus vulgaris
Phvul.006G001800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 511544-512543 Phaseolus vulgaris
Phvul.006G001800 2.0kb upstream 2.0kb upstream 9536 true Chr06: 512544-522079 Phaseolus vulgaris
Phvul.006G001800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 520080-522079 Phaseolus vulgaris
Phvul.006G001800 2.0kb downstream 2.0kb downstream 9536 true Chr06: 510544-520079 Phaseolus vulgaris
Phvul.006G001800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 510544-512543 Phaseolus vulgaris
Phvul.006G001800 5.0kb upstream 5.0kb upstream 12536 true Chr06: 512544-525079 Phaseolus vulgaris
Phvul.006G001800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 520080-525079 Phaseolus vulgaris
Phvul.006G001800 5.0kb downstream 5.0kb downstream 12536 true Chr06: 507544-520079 Phaseolus vulgaris
Phvul.006G001800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 507544-512543 Phaseolus vulgaris
Phvul.006G001800 10.0kb upstream 10.0kb upstream 17536 true Chr06: 512544-530079 Phaseolus vulgaris
Phvul.006G001800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 520080-530079 Phaseolus vulgaris
Phvul.006G001800 10.0kb downstream 10.0kb downstream 17536 true Chr06: 502544-520079 Phaseolus vulgaris
Phvul.006G001800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 502544-512543 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304958 5265 Fabidae View MSA
124060622 5270 Rosid View MSA
123739878 5271 Pentapetalae View MSA
122791925 5272 Eudicot View MSA
122046455 5273 Angiosperm View MSA
121344322 5274 Embryophyte View MSA
123425361 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.9233 0.0 39.2835    
cufflinks 7.56605 0.0 29.4537    
cufflinks 7.0143 0.0 24.0678   Low
cufflinks 9.65665 0.0 36.3755    
cufflinks 8.36576 0.0 28.1677    
cufflinks 6.53692 0.0 22.9346   Low
cufflinks 11.2999 0.0 40.6446   High
cufflinks 12.0238 0.0 42.4759   High
cufflinks 10.2067 0.0 37.8388    
cufflinks 9.97852 0.0 36.7019    
cufflinks 7.19083 0.0 24.8804   Low

0 Strain