Gene : Phvul.010G052600 P. vulgaris v2.1
Defline:  (1 of 9) K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) Genomic Order:  508
Name:  ? Phvul.010G052600 Secondary Identifier:  ? PAC:37142214
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G052600 0.5kb upstream 0.5kb upstream 2355 true Chr10: 8118251-8120605 Phaseolus vulgaris
Phvul.010G052600 0.5kb upstream 0.5kb upstream 500 false Chr10: 8118251-8118750 Phaseolus vulgaris
Phvul.010G052600 0.5kb downstream 0.5kb downstream 2355 true Chr10: 8118751-8121105 Phaseolus vulgaris
Phvul.010G052600 0.5kb downstream 0.5kb downstream 500 false Chr10: 8120606-8121105 Phaseolus vulgaris
Phvul.010G052600 1.0kb upstream 1.0kb upstream 2855 true Chr10: 8117751-8120605 Phaseolus vulgaris
Phvul.010G052600 1.0kb upstream 1.0kb upstream 1000 false Chr10: 8117751-8118750 Phaseolus vulgaris
Phvul.010G052600 1.0kb downstream 1.0kb downstream 2855 true Chr10: 8118751-8121605 Phaseolus vulgaris
Phvul.010G052600 1.0kb downstream 1.0kb downstream 1000 false Chr10: 8120606-8121605 Phaseolus vulgaris
Phvul.010G052600 2.0kb upstream 2.0kb upstream 3855 true Chr10: 8116751-8120605 Phaseolus vulgaris
Phvul.010G052600 2.0kb upstream 2.0kb upstream 2000 false Chr10: 8116751-8118750 Phaseolus vulgaris
Phvul.010G052600 2.0kb downstream 2.0kb downstream 3855 true Chr10: 8118751-8122605 Phaseolus vulgaris
Phvul.010G052600 2.0kb downstream 2.0kb downstream 2000 false Chr10: 8120606-8122605 Phaseolus vulgaris
Phvul.010G052600 5.0kb upstream 5.0kb upstream 6855 true Chr10: 8113751-8120605 Phaseolus vulgaris
Phvul.010G052600 5.0kb upstream 5.0kb upstream 5000 false Chr10: 8113751-8118750 Phaseolus vulgaris
Phvul.010G052600 5.0kb downstream 5.0kb downstream 6855 true Chr10: 8118751-8125605 Phaseolus vulgaris
Phvul.010G052600 5.0kb downstream 5.0kb downstream 5000 false Chr10: 8120606-8125605 Phaseolus vulgaris
Phvul.010G052600 10.0kb upstream 10.0kb upstream 11855 true Chr10: 8108751-8120605 Phaseolus vulgaris
Phvul.010G052600 10.0kb upstream 10.0kb upstream 10000 false Chr10: 8108751-8118750 Phaseolus vulgaris
Phvul.010G052600 10.0kb downstream 10.0kb downstream 11855 true Chr10: 8118751-8130605 Phaseolus vulgaris
Phvul.010G052600 10.0kb downstream 10.0kb downstream 10000 false Chr10: 8120606-8130605 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313981 5265 Fabidae View MSA
124074559 5270 Rosid View MSA
123753748 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0834117 0.0 0.413388 Low Low
cufflinks 0.0780384 0.0 0.389772 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.149029 0.0 0.699772 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.465349 0.0 1.94261 Low  
cufflinks 0.954173 0.0 3.75598   High
cufflinks 0.401268 0.0 1.69677 Low  
cufflinks 0.0889161 0.0 0.438892 Low  
cufflinks 0.345591 0.0 1.48732 Low  

0 Strain