Gene : Phvul.010G040200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21192 - NUCLEAR PROTEIN E3-3 Genomic Order:  395
Name:  ? Phvul.010G040200 Secondary Identifier:  ? PAC:37142842
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G040200 0.5kb upstream 0.5kb upstream 4565 true Chr10: 5885585-5890149 Phaseolus vulgaris
Phvul.010G040200 0.5kb upstream 0.5kb upstream 500 false Chr10: 5885585-5886084 Phaseolus vulgaris
Phvul.010G040200 0.5kb downstream 0.5kb downstream 4565 true Chr10: 5886085-5890649 Phaseolus vulgaris
Phvul.010G040200 0.5kb downstream 0.5kb downstream 500 false Chr10: 5890150-5890649 Phaseolus vulgaris
Phvul.010G040200 1.0kb upstream 1.0kb upstream 5065 true Chr10: 5885085-5890149 Phaseolus vulgaris
Phvul.010G040200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 5885085-5886084 Phaseolus vulgaris
Phvul.010G040200 1.0kb downstream 1.0kb downstream 5065 true Chr10: 5886085-5891149 Phaseolus vulgaris
Phvul.010G040200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 5890150-5891149 Phaseolus vulgaris
Phvul.010G040200 2.0kb upstream 2.0kb upstream 6065 true Chr10: 5884085-5890149 Phaseolus vulgaris
Phvul.010G040200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 5884085-5886084 Phaseolus vulgaris
Phvul.010G040200 2.0kb downstream 2.0kb downstream 6065 true Chr10: 5886085-5892149 Phaseolus vulgaris
Phvul.010G040200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 5890150-5892149 Phaseolus vulgaris
Phvul.010G040200 5.0kb upstream 5.0kb upstream 9065 true Chr10: 5881085-5890149 Phaseolus vulgaris
Phvul.010G040200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 5881085-5886084 Phaseolus vulgaris
Phvul.010G040200 5.0kb downstream 5.0kb downstream 9065 true Chr10: 5886085-5895149 Phaseolus vulgaris
Phvul.010G040200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 5890150-5895149 Phaseolus vulgaris
Phvul.010G040200 10.0kb upstream 10.0kb upstream 14065 true Chr10: 5876085-5890149 Phaseolus vulgaris
Phvul.010G040200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 5876085-5886084 Phaseolus vulgaris
Phvul.010G040200 10.0kb downstream 10.0kb downstream 14065 true Chr10: 5886085-5900149 Phaseolus vulgaris
Phvul.010G040200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 5890150-5900149 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026335 5273 Angiosperm View MSA
122312393 5265 Fabidae View MSA
124064435 5270 Rosid View MSA
123737583 5271 Pentapetalae View MSA
122789794 5272 Eudicot View MSA
121344715 5274 Embryophyte View MSA
123423975 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.5585 0.0 48.1049    
cufflinks 12.9649 0.0 36.5254    
cufflinks 12.4203 0.0 35.1062    
cufflinks 26.5771 0.0 70.6658   High
cufflinks 9.52631 0.0 27.795    
cufflinks 6.13774 0.0 18.7661   Low
cufflinks 9.08361 0.0 26.5463    
cufflinks 12.8491 0.0 36.2051    
cufflinks 11.9343 0.0 33.9412    
cufflinks 13.4249 0.0 37.7349    
cufflinks 10.5743 0.0 30.4816    

0 Strain