Gene : Phvul.005G185300 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1752
Name:  ? Phvul.005G185300 Secondary Identifier:  ? PAC:37152496
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G185300 0.5kb upstream 0.5kb upstream 3691 true Chr05: 40849236-40852926 Phaseolus vulgaris
Phvul.005G185300 0.5kb upstream 0.5kb upstream 500 false Chr05: 40852427-40852926 Phaseolus vulgaris
Phvul.005G185300 0.5kb downstream 0.5kb downstream 3691 true Chr05: 40848736-40852426 Phaseolus vulgaris
Phvul.005G185300 0.5kb downstream 0.5kb downstream 500 false Chr05: 40848736-40849235 Phaseolus vulgaris
Phvul.005G185300 1.0kb upstream 1.0kb upstream 4191 true Chr05: 40849236-40853426 Phaseolus vulgaris
Phvul.005G185300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40852427-40853426 Phaseolus vulgaris
Phvul.005G185300 1.0kb downstream 1.0kb downstream 4191 true Chr05: 40848236-40852426 Phaseolus vulgaris
Phvul.005G185300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40848236-40849235 Phaseolus vulgaris
Phvul.005G185300 2.0kb upstream 2.0kb upstream 5191 true Chr05: 40849236-40854426 Phaseolus vulgaris
Phvul.005G185300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40852427-40854426 Phaseolus vulgaris
Phvul.005G185300 2.0kb downstream 2.0kb downstream 5191 true Chr05: 40847236-40852426 Phaseolus vulgaris
Phvul.005G185300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40847236-40849235 Phaseolus vulgaris
Phvul.005G185300 5.0kb upstream 5.0kb upstream 8191 true Chr05: 40849236-40857426 Phaseolus vulgaris
Phvul.005G185300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40852427-40857426 Phaseolus vulgaris
Phvul.005G185300 5.0kb downstream 5.0kb downstream 8191 true Chr05: 40844236-40852426 Phaseolus vulgaris
Phvul.005G185300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40844236-40849235 Phaseolus vulgaris
Phvul.005G185300 10.0kb upstream 10.0kb upstream 13191 true Chr05: 40849236-40862426 Phaseolus vulgaris
Phvul.005G185300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40852427-40862426 Phaseolus vulgaris
Phvul.005G185300 10.0kb downstream 10.0kb downstream 13191 true Chr05: 40839236-40852426 Phaseolus vulgaris
Phvul.005G185300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40839236-40849235 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041217 5273 Angiosperm View MSA
122301081 5265 Fabidae View MSA
124067032 5270 Rosid View MSA
123740390 5271 Pentapetalae View MSA
122769977 5272 Eudicot View MSA
121309817 5274 Embryophyte View MSA
123347469 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.66509 0.0 5.28639   Low
cufflinks 3.57294 0.0 10.3886   High
cufflinks 2.56849 0.0 7.71407    
cufflinks 2.49419 0.0 7.58575    
cufflinks 2.88319 0.0 8.62464    
cufflinks 2.94141 0.0 8.73715    
cufflinks 2.16314 0.0 6.67374    
cufflinks 2.38291 0.0 7.22662    
cufflinks 2.59812 0.0 7.86758    
cufflinks 2.64544 0.0 7.9535    
cufflinks 2.47467 0.0 7.54204    

0 Strain