Gene : Phvul.010G046400 P. vulgaris v2.1
Defline:  (1 of 4) 6.1.1.6 - Lysine--tRNA ligase / Lysyl-tRNA synthetase Genomic Order:  456
Name:  ? Phvul.010G046400 Secondary Identifier:  ? PAC:37143054
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G046400 0.5kb upstream 0.5kb upstream 16278 true Chr10: 7052190-7068467 Phaseolus vulgaris
Phvul.010G046400 0.5kb upstream 0.5kb upstream 500 false Chr10: 7067968-7068467 Phaseolus vulgaris
Phvul.010G046400 0.5kb downstream 0.5kb downstream 16278 true Chr10: 7051690-7067967 Phaseolus vulgaris
Phvul.010G046400 0.5kb downstream 0.5kb downstream 500 false Chr10: 7051690-7052189 Phaseolus vulgaris
Phvul.010G046400 1.0kb upstream 1.0kb upstream 16778 true Chr10: 7052190-7068967 Phaseolus vulgaris
Phvul.010G046400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 7067968-7068967 Phaseolus vulgaris
Phvul.010G046400 1.0kb downstream 1.0kb downstream 16778 true Chr10: 7051190-7067967 Phaseolus vulgaris
Phvul.010G046400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 7051190-7052189 Phaseolus vulgaris
Phvul.010G046400 2.0kb upstream 2.0kb upstream 17778 true Chr10: 7052190-7069967 Phaseolus vulgaris
Phvul.010G046400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 7067968-7069967 Phaseolus vulgaris
Phvul.010G046400 2.0kb downstream 2.0kb downstream 17778 true Chr10: 7050190-7067967 Phaseolus vulgaris
Phvul.010G046400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 7050190-7052189 Phaseolus vulgaris
Phvul.010G046400 5.0kb upstream 5.0kb upstream 20778 true Chr10: 7052190-7072967 Phaseolus vulgaris
Phvul.010G046400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 7067968-7072967 Phaseolus vulgaris
Phvul.010G046400 5.0kb downstream 5.0kb downstream 20778 true Chr10: 7047190-7067967 Phaseolus vulgaris
Phvul.010G046400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 7047190-7052189 Phaseolus vulgaris
Phvul.010G046400 10.0kb upstream 10.0kb upstream 25778 true Chr10: 7052190-7077967 Phaseolus vulgaris
Phvul.010G046400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 7067968-7077967 Phaseolus vulgaris
Phvul.010G046400 10.0kb downstream 10.0kb downstream 25778 true Chr10: 7042190-7067967 Phaseolus vulgaris
Phvul.010G046400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 7042190-7052189 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305134 5265 Fabidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.92589 0.0 18.8518    
cufflinks 8.8358 0.0 23.6164    
cufflinks 19.8839 0.0 51.4004   High
cufflinks 5.99125 0.0 16.6529    
cufflinks 5.76728 0.0 16.1034    
cufflinks 21.3213 0.0 55.1125   High
cufflinks 3.4261 0.0 9.97995   Low
cufflinks 4.19433 0.0 11.9271    
cufflinks 4.34883 0.0 12.3784    
cufflinks 6.48001 0.0 17.7925    
cufflinks 5.94348 0.0 16.4811    

0 Strain