Gene : Phvul.009G015100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22870:SF195 - REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN Genomic Order:  144
Name:  ? Phvul.009G015100 Secondary Identifier:  ? PAC:37149476
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G015100 0.5kb upstream 0.5kb upstream 7162 true Chr09: 2490563-2497724 Phaseolus vulgaris
Phvul.009G015100 0.5kb upstream 0.5kb upstream 500 false Chr09: 2490563-2491062 Phaseolus vulgaris
Phvul.009G015100 0.5kb downstream 0.5kb downstream 7162 true Chr09: 2491063-2498224 Phaseolus vulgaris
Phvul.009G015100 0.5kb downstream 0.5kb downstream 500 false Chr09: 2497725-2498224 Phaseolus vulgaris
Phvul.009G015100 1.0kb upstream 1.0kb upstream 7662 true Chr09: 2490063-2497724 Phaseolus vulgaris
Phvul.009G015100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 2490063-2491062 Phaseolus vulgaris
Phvul.009G015100 1.0kb downstream 1.0kb downstream 7662 true Chr09: 2491063-2498724 Phaseolus vulgaris
Phvul.009G015100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 2497725-2498724 Phaseolus vulgaris
Phvul.009G015100 2.0kb upstream 2.0kb upstream 8662 true Chr09: 2489063-2497724 Phaseolus vulgaris
Phvul.009G015100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 2489063-2491062 Phaseolus vulgaris
Phvul.009G015100 2.0kb downstream 2.0kb downstream 8662 true Chr09: 2491063-2499724 Phaseolus vulgaris
Phvul.009G015100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 2497725-2499724 Phaseolus vulgaris
Phvul.009G015100 5.0kb upstream 5.0kb upstream 11662 true Chr09: 2486063-2497724 Phaseolus vulgaris
Phvul.009G015100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 2486063-2491062 Phaseolus vulgaris
Phvul.009G015100 5.0kb downstream 5.0kb downstream 11662 true Chr09: 2491063-2502724 Phaseolus vulgaris
Phvul.009G015100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 2497725-2502724 Phaseolus vulgaris
Phvul.009G015100 10.0kb upstream 10.0kb upstream 16662 true Chr09: 2481063-2497724 Phaseolus vulgaris
Phvul.009G015100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 2481063-2491062 Phaseolus vulgaris
Phvul.009G015100 10.0kb downstream 10.0kb downstream 16662 true Chr09: 2491063-2507724 Phaseolus vulgaris
Phvul.009G015100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 2497725-2507724 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304201 5265 Fabidae View MSA
124062556 5270 Rosid View MSA
123737000 5271 Pentapetalae View MSA
122793857 5272 Eudicot View MSA
122050415 5273 Angiosperm View MSA
121350788 5274 Embryophyte View MSA
123425107 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.9972 0.0 36.1874   Low
cufflinks 34.5571 0.0 92.2299 High  
cufflinks 13.1368 0.0 33.9923   Low
cufflinks 13.6127 0.0 35.251   Low
cufflinks 32.5958 0.0 86.3282    
cufflinks 22.7821 0.0 59.3569    
cufflinks 39.0214 0.0 105.61 High  
cufflinks 45.4844 0.0 124.821 High High
cufflinks 34.4528 0.0 92.066 High  
cufflinks 24.5208 0.0 63.9957    
cufflinks 31.3783 0.0 83.1426    

0 Strain