Gene : Phvul.006G127500 P. vulgaris v2.1
Defline:  (1 of 1) K00020 - 3-hydroxyisobutyrate dehydrogenase (E1.1.1.31, mmsB) Genomic Order:  1269
Name:  ? Phvul.006G127500 Secondary Identifier:  ? PAC:37172376
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris VALDEG-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G127500 0.5kb upstream 0.5kb upstream 7021 true Chr06: 23536815-23543835 Phaseolus vulgaris
Phvul.006G127500 0.5kb upstream 0.5kb upstream 500 false Chr06: 23536815-23537314 Phaseolus vulgaris
Phvul.006G127500 0.5kb downstream 0.5kb downstream 7021 true Chr06: 23537315-23544335 Phaseolus vulgaris
Phvul.006G127500 0.5kb downstream 0.5kb downstream 500 false Chr06: 23543836-23544335 Phaseolus vulgaris
Phvul.006G127500 1.0kb upstream 1.0kb upstream 7521 true Chr06: 23536315-23543835 Phaseolus vulgaris
Phvul.006G127500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 23536315-23537314 Phaseolus vulgaris
Phvul.006G127500 1.0kb downstream 1.0kb downstream 7521 true Chr06: 23537315-23544835 Phaseolus vulgaris
Phvul.006G127500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 23543836-23544835 Phaseolus vulgaris
Phvul.006G127500 2.0kb upstream 2.0kb upstream 8521 true Chr06: 23535315-23543835 Phaseolus vulgaris
Phvul.006G127500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 23535315-23537314 Phaseolus vulgaris
Phvul.006G127500 2.0kb downstream 2.0kb downstream 8521 true Chr06: 23537315-23545835 Phaseolus vulgaris
Phvul.006G127500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 23543836-23545835 Phaseolus vulgaris
Phvul.006G127500 5.0kb upstream 5.0kb upstream 11521 true Chr06: 23532315-23543835 Phaseolus vulgaris
Phvul.006G127500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 23532315-23537314 Phaseolus vulgaris
Phvul.006G127500 5.0kb downstream 5.0kb downstream 11521 true Chr06: 23537315-23548835 Phaseolus vulgaris
Phvul.006G127500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 23543836-23548835 Phaseolus vulgaris
Phvul.006G127500 10.0kb upstream 10.0kb upstream 16521 true Chr06: 23527315-23543835 Phaseolus vulgaris
Phvul.006G127500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 23527315-23537314 Phaseolus vulgaris
Phvul.006G127500 10.0kb downstream 10.0kb downstream 16521 true Chr06: 23537315-23553835 Phaseolus vulgaris
Phvul.006G127500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 23543836-23553835 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300764 5265 Fabidae View MSA
124062564 5270 Rosid View MSA
123738883 5271 Pentapetalae View MSA
122787575 5272 Eudicot View MSA
122045971 5273 Angiosperm View MSA
121347535 5274 Embryophyte View MSA
123424560 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 49.731 0.0 189.775 High High
cufflinks 11.1858 0.0 69.3056    
cufflinks 5.67207 0.0 60.2143    
cufflinks 12.2086 0.0 51.524    
cufflinks 6.95599 0.0 46.0626    
cufflinks 2.68244 0.0 64.4483    
cufflinks 1.57101 0.0 53.6169   Low
cufflinks 0.700433 0.0 70.2896   Low
cufflinks 3.40915 0.0 60.3753    
cufflinks 7.54941 0.0 55.7416    
cufflinks 3.58844 0.0 16.9804    

0 Strain