Gene : Phvul.009G011300 P. vulgaris v2.1
Defline:  (1 of 2) K12385 - Niemann-Pick C1 protein (NPC1) Genomic Order:  106
Name:  ? Phvul.009G011300 Secondary Identifier:  ? PAC:37150693
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G011300 0.5kb upstream 0.5kb upstream 16153 true Chr09: 1942339-1958491 Phaseolus vulgaris
Phvul.009G011300 0.5kb upstream 0.5kb upstream 500 false Chr09: 1957992-1958491 Phaseolus vulgaris
Phvul.009G011300 0.5kb downstream 0.5kb downstream 16153 true Chr09: 1941839-1957991 Phaseolus vulgaris
Phvul.009G011300 0.5kb downstream 0.5kb downstream 500 false Chr09: 1941839-1942338 Phaseolus vulgaris
Phvul.009G011300 1.0kb upstream 1.0kb upstream 16653 true Chr09: 1942339-1958991 Phaseolus vulgaris
Phvul.009G011300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 1957992-1958991 Phaseolus vulgaris
Phvul.009G011300 1.0kb downstream 1.0kb downstream 16653 true Chr09: 1941339-1957991 Phaseolus vulgaris
Phvul.009G011300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 1941339-1942338 Phaseolus vulgaris
Phvul.009G011300 2.0kb upstream 2.0kb upstream 17653 true Chr09: 1942339-1959991 Phaseolus vulgaris
Phvul.009G011300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 1957992-1959991 Phaseolus vulgaris
Phvul.009G011300 2.0kb downstream 2.0kb downstream 17653 true Chr09: 1940339-1957991 Phaseolus vulgaris
Phvul.009G011300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 1940339-1942338 Phaseolus vulgaris
Phvul.009G011300 5.0kb upstream 5.0kb upstream 20653 true Chr09: 1942339-1962991 Phaseolus vulgaris
Phvul.009G011300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 1957992-1962991 Phaseolus vulgaris
Phvul.009G011300 5.0kb downstream 5.0kb downstream 20653 true Chr09: 1937339-1957991 Phaseolus vulgaris
Phvul.009G011300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 1937339-1942338 Phaseolus vulgaris
Phvul.009G011300 10.0kb upstream 10.0kb upstream 25653 true Chr09: 1942339-1967991 Phaseolus vulgaris
Phvul.009G011300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 1957992-1967991 Phaseolus vulgaris
Phvul.009G011300 10.0kb downstream 10.0kb downstream 25653 true Chr09: 1932339-1957991 Phaseolus vulgaris
Phvul.009G011300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 1932339-1942338 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312597 5265 Fabidae View MSA
124071580 5270 Rosid View MSA
123738357 5271 Pentapetalae View MSA
122785760 5272 Eudicot View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.2173 0.0 5.02113   Low
cufflinks 4.74568 0.0 16.6101    
cufflinks 8.25786 0.0 23.236    
cufflinks 2.25067 0.0 9.24519   Low
cufflinks 9.99372 0.0 27.9398    
cufflinks 7.40871 0.0 21.075    
cufflinks 6.86002 0.0 22.8389    
cufflinks 4.46077 0.0 13.4983    
cufflinks 9.46659 0.0 30.7942    
cufflinks 11.3114 0.0 36.7676   High
cufflinks 5.41808 0.0 16.1084    

0 Strain