Gene : Phvul.009G071300 P. vulgaris v2.1
Defline:  (1 of 3) PTHR24093:SF262 - CALCIUM-TRANSPORTING ATPASE 2, PLASMA MEMBRANE-TYPE-RELATED Genomic Order:  733
Name:  ? Phvul.009G071300 Secondary Identifier:  ? PAC:37149128
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G071300 0.5kb upstream 0.5kb upstream 8970 true Chr09: 12302886-12311855 Phaseolus vulgaris
Phvul.009G071300 0.5kb upstream 0.5kb upstream 500 false Chr09: 12302886-12303385 Phaseolus vulgaris
Phvul.009G071300 0.5kb downstream 0.5kb downstream 8970 true Chr09: 12303386-12312355 Phaseolus vulgaris
Phvul.009G071300 0.5kb downstream 0.5kb downstream 500 false Chr09: 12311856-12312355 Phaseolus vulgaris
Phvul.009G071300 1.0kb upstream 1.0kb upstream 9470 true Chr09: 12302386-12311855 Phaseolus vulgaris
Phvul.009G071300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 12302386-12303385 Phaseolus vulgaris
Phvul.009G071300 1.0kb downstream 1.0kb downstream 9470 true Chr09: 12303386-12312855 Phaseolus vulgaris
Phvul.009G071300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 12311856-12312855 Phaseolus vulgaris
Phvul.009G071300 2.0kb upstream 2.0kb upstream 10470 true Chr09: 12301386-12311855 Phaseolus vulgaris
Phvul.009G071300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 12301386-12303385 Phaseolus vulgaris
Phvul.009G071300 2.0kb downstream 2.0kb downstream 10470 true Chr09: 12303386-12313855 Phaseolus vulgaris
Phvul.009G071300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 12311856-12313855 Phaseolus vulgaris
Phvul.009G071300 5.0kb upstream 5.0kb upstream 13470 true Chr09: 12298386-12311855 Phaseolus vulgaris
Phvul.009G071300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 12298386-12303385 Phaseolus vulgaris
Phvul.009G071300 5.0kb downstream 5.0kb downstream 13470 true Chr09: 12303386-12316855 Phaseolus vulgaris
Phvul.009G071300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 12311856-12316855 Phaseolus vulgaris
Phvul.009G071300 10.0kb upstream 10.0kb upstream 18470 true Chr09: 12293386-12311855 Phaseolus vulgaris
Phvul.009G071300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 12293386-12303385 Phaseolus vulgaris
Phvul.009G071300 10.0kb downstream 10.0kb downstream 18470 true Chr09: 12303386-12321855 Phaseolus vulgaris
Phvul.009G071300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 12311856-12321855 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307092 5265 Fabidae View MSA
124067452 5270 Rosid View MSA
123746765 5271 Pentapetalae View MSA
122788343 5272 Eudicot View MSA
122047165 5273 Angiosperm View MSA
121349207 5274 Embryophyte View MSA
123428805 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.76931 0.0 15.2382   Low
cufflinks 8.78072 0.0 22.7841    
cufflinks 25.3552 0.0 67.5668   High
cufflinks 8.04189 0.0 21.0062   Low
cufflinks 12.6455 0.0 32.6863    
cufflinks 22.9743 0.0 60.6633    
cufflinks 19.5968 0.0 51.2295    
cufflinks 26.1977 0.0 70.0139   High
cufflinks 24.3155 0.0 64.1947    
cufflinks 12.0872 0.0 31.2438    
cufflinks 12.9129 0.0 33.3795    

0 Strain