Gene : Phvul.L001972 P. vulgaris v2.1
Defline:  (1 of 5) 3.4.21.102 - C-terminal processing peptidase / Tsp protease Genomic Order:  4
Name:  ? Phvul.L001972 Secondary Identifier:  ? PAC:37167674
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L001972 0.5kb upstream 0.5kb upstream 8059 true scaffold_44: 123457-131515 Phaseolus vulgaris
Phvul.L001972 0.5kb upstream 0.5kb upstream 500 false scaffold_44: 123457-123956 Phaseolus vulgaris
Phvul.L001972 0.5kb downstream 0.5kb downstream 8059 true scaffold_44: 123957-132015 Phaseolus vulgaris
Phvul.L001972 0.5kb downstream 0.5kb downstream 500 false scaffold_44: 131516-132015 Phaseolus vulgaris
Phvul.L001972 1.0kb upstream 1.0kb upstream 8559 true scaffold_44: 122957-131515 Phaseolus vulgaris
Phvul.L001972 1.0kb upstream 1.0kb upstream 1000 false scaffold_44: 122957-123956 Phaseolus vulgaris
Phvul.L001972 1.0kb downstream 1.0kb downstream 8559 true scaffold_44: 123957-132515 Phaseolus vulgaris
Phvul.L001972 1.0kb downstream 1.0kb downstream 1000 false scaffold_44: 131516-132515 Phaseolus vulgaris
Phvul.L001972 2.0kb upstream 2.0kb upstream 9559 true scaffold_44: 121957-131515 Phaseolus vulgaris
Phvul.L001972 2.0kb upstream 2.0kb upstream 2000 false scaffold_44: 121957-123956 Phaseolus vulgaris
Phvul.L001972 2.0kb downstream 2.0kb downstream 9559 true scaffold_44: 123957-133515 Phaseolus vulgaris
Phvul.L001972 2.0kb downstream 2.0kb downstream 2000 false scaffold_44: 131516-133515 Phaseolus vulgaris
Phvul.L001972 5.0kb upstream 5.0kb upstream 12559 true scaffold_44: 118957-131515 Phaseolus vulgaris
Phvul.L001972 5.0kb upstream 5.0kb upstream 5000 false scaffold_44: 118957-123956 Phaseolus vulgaris
Phvul.L001972 5.0kb downstream 5.0kb downstream 12559 true scaffold_44: 123957-136515 Phaseolus vulgaris
Phvul.L001972 5.0kb downstream 5.0kb downstream 5000 false scaffold_44: 131516-136515 Phaseolus vulgaris
Phvul.L001972 10.0kb upstream 10.0kb upstream 17559 true scaffold_44: 113957-131515 Phaseolus vulgaris
Phvul.L001972 10.0kb upstream 10.0kb upstream 10000 false scaffold_44: 113957-123956 Phaseolus vulgaris
Phvul.L001972 10.0kb downstream 10.0kb downstream 17559 true scaffold_44: 123957-141515 Phaseolus vulgaris
Phvul.L001972 10.0kb downstream 10.0kb downstream 10000 false scaffold_44: 131516-141515 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306257 5265 Fabidae View MSA
124060968 5270 Rosid View MSA
123750616 5271 Pentapetalae View MSA
122792134 5272 Eudicot View MSA
122042962 5273 Angiosperm View MSA
121346288 5274 Embryophyte View MSA
123424698 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.3404 0.0 9.8423    
cufflinks 5.17579 0.0 14.5697    
cufflinks 28.9873 0.0 75.2367   High
cufflinks 3.68805 0.0 10.8572    
cufflinks 2.92612 0.0 8.84042    
cufflinks 13.3892 0.0 34.997   High
cufflinks 1.0938 0.0 3.66753   Low
cufflinks 1.92742 0.0 6.01649    
cufflinks 0.966815 0.0 3.29641   Low
cufflinks 3.41135 0.0 10.035    
cufflinks 2.64526 0.0 8.06803    

0 Strain