Gene : Phvul.006G112200 P. vulgaris v2.1
Defline:  (1 of 3) PTHR10217:SF465 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 11-RELATED Genomic Order:  1112
Name:  ? Phvul.006G112200 Secondary Identifier:  ? PAC:37172728
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G112200 0.5kb upstream 0.5kb upstream 5075 true Chr06: 22110041-22115115 Phaseolus vulgaris
Phvul.006G112200 0.5kb upstream 0.5kb upstream 500 false Chr06: 22110041-22110540 Phaseolus vulgaris
Phvul.006G112200 0.5kb downstream 0.5kb downstream 5075 true Chr06: 22110541-22115615 Phaseolus vulgaris
Phvul.006G112200 0.5kb downstream 0.5kb downstream 500 false Chr06: 22115116-22115615 Phaseolus vulgaris
Phvul.006G112200 1.0kb upstream 1.0kb upstream 5575 true Chr06: 22109541-22115115 Phaseolus vulgaris
Phvul.006G112200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 22109541-22110540 Phaseolus vulgaris
Phvul.006G112200 1.0kb downstream 1.0kb downstream 5575 true Chr06: 22110541-22116115 Phaseolus vulgaris
Phvul.006G112200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 22115116-22116115 Phaseolus vulgaris
Phvul.006G112200 2.0kb upstream 2.0kb upstream 6575 true Chr06: 22108541-22115115 Phaseolus vulgaris
Phvul.006G112200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 22108541-22110540 Phaseolus vulgaris
Phvul.006G112200 2.0kb downstream 2.0kb downstream 6575 true Chr06: 22110541-22117115 Phaseolus vulgaris
Phvul.006G112200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 22115116-22117115 Phaseolus vulgaris
Phvul.006G112200 5.0kb upstream 5.0kb upstream 9575 true Chr06: 22105541-22115115 Phaseolus vulgaris
Phvul.006G112200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 22105541-22110540 Phaseolus vulgaris
Phvul.006G112200 5.0kb downstream 5.0kb downstream 9575 true Chr06: 22110541-22120115 Phaseolus vulgaris
Phvul.006G112200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 22115116-22120115 Phaseolus vulgaris
Phvul.006G112200 10.0kb upstream 10.0kb upstream 14575 true Chr06: 22100541-22115115 Phaseolus vulgaris
Phvul.006G112200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 22100541-22110540 Phaseolus vulgaris
Phvul.006G112200 10.0kb downstream 10.0kb downstream 14575 true Chr06: 22110541-22125115 Phaseolus vulgaris
Phvul.006G112200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 22115116-22125115 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313450 5265 Fabidae View MSA
124050847 5270 Rosid View MSA
123745876 5271 Pentapetalae View MSA
122785866 5272 Eudicot View MSA
122044448 5273 Angiosperm View MSA
121351754 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.08577 0.0 19.1276    
cufflinks 5.81585 0.0 15.9834    
cufflinks 5.28346 0.0 14.5909    
cufflinks 2.40329 0.0 7.28005   Low
cufflinks 4.71469 0.0 13.2818    
cufflinks 7.67453 0.0 20.5983    
cufflinks 9.83726 0.0 25.9543    
cufflinks 5.82905 0.0 15.954    
cufflinks 9.49828 0.0 25.1607    
cufflinks 19.4756 0.0 50.3409   High
cufflinks 8.05968 0.0 21.6372    

0 Strain