Gene : Phvul.006G100200 P. vulgaris v2.1
Defline:  (1 of 1) 5.4.99.27 - tRNA pseudouridine(13) synthase / tRNA Psi(13) synthase Genomic Order:  997
Name:  ? Phvul.006G100200 Secondary Identifier:  ? PAC:37172098
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G100200 0.5kb upstream 0.5kb upstream 15789 true Chr06: 21052797-21068585 Phaseolus vulgaris
Phvul.006G100200 0.5kb upstream 0.5kb upstream 500 false Chr06: 21052797-21053296 Phaseolus vulgaris
Phvul.006G100200 0.5kb downstream 0.5kb downstream 15789 true Chr06: 21053297-21069085 Phaseolus vulgaris
Phvul.006G100200 0.5kb downstream 0.5kb downstream 500 false Chr06: 21068586-21069085 Phaseolus vulgaris
Phvul.006G100200 1.0kb upstream 1.0kb upstream 16289 true Chr06: 21052297-21068585 Phaseolus vulgaris
Phvul.006G100200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 21052297-21053296 Phaseolus vulgaris
Phvul.006G100200 1.0kb downstream 1.0kb downstream 16289 true Chr06: 21053297-21069585 Phaseolus vulgaris
Phvul.006G100200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 21068586-21069585 Phaseolus vulgaris
Phvul.006G100200 2.0kb upstream 2.0kb upstream 17289 true Chr06: 21051297-21068585 Phaseolus vulgaris
Phvul.006G100200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 21051297-21053296 Phaseolus vulgaris
Phvul.006G100200 2.0kb downstream 2.0kb downstream 17289 true Chr06: 21053297-21070585 Phaseolus vulgaris
Phvul.006G100200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 21068586-21070585 Phaseolus vulgaris
Phvul.006G100200 5.0kb upstream 5.0kb upstream 20289 true Chr06: 21048297-21068585 Phaseolus vulgaris
Phvul.006G100200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 21048297-21053296 Phaseolus vulgaris
Phvul.006G100200 5.0kb downstream 5.0kb downstream 20289 true Chr06: 21053297-21073585 Phaseolus vulgaris
Phvul.006G100200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 21068586-21073585 Phaseolus vulgaris
Phvul.006G100200 10.0kb upstream 10.0kb upstream 25289 true Chr06: 21043297-21068585 Phaseolus vulgaris
Phvul.006G100200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 21043297-21053296 Phaseolus vulgaris
Phvul.006G100200 10.0kb downstream 10.0kb downstream 25289 true Chr06: 21053297-21078585 Phaseolus vulgaris
Phvul.006G100200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 21068586-21078585 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041433 5273 Angiosperm View MSA
122303878 5265 Fabidae View MSA
124065377 5270 Rosid View MSA
123738255 5271 Pentapetalae View MSA
122787643 5272 Eudicot View MSA
121347450 5274 Embryophyte View MSA
123427840 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.13965 0.0 6.50922   Low
cufflinks 5.62352 0.0 15.5235   High
cufflinks 2.57352 0.0 7.66937    
cufflinks 2.2244 0.0 6.82255   Low
cufflinks 2.86412 0.0 8.53229    
cufflinks 3.95221 0.0 11.2614    
cufflinks 4.55955 0.0 12.8402    
cufflinks 6.61595 0.0 17.9228   High
cufflinks 3.63533 0.0 10.4974    
cufflinks 3.86082 0.0 11.0413    
cufflinks 3.03253 0.0 8.95925    

0 Strain