Gene : Phvul.006G102500 P. vulgaris v2.1
Defline:  (1 of 1) K14574 - ribosome maturation protein SDO1 (SDO1, SBDS) Genomic Order:  1019
Name:  ? Phvul.006G102500 Secondary Identifier:  ? PAC:37173627
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G102500 0.5kb upstream 0.5kb upstream 4783 true Chr06: 21221620-21226402 Phaseolus vulgaris
Phvul.006G102500 0.5kb upstream 0.5kb upstream 500 false Chr06: 21221620-21222119 Phaseolus vulgaris
Phvul.006G102500 0.5kb downstream 0.5kb downstream 4783 true Chr06: 21222120-21226902 Phaseolus vulgaris
Phvul.006G102500 0.5kb downstream 0.5kb downstream 500 false Chr06: 21226403-21226902 Phaseolus vulgaris
Phvul.006G102500 1.0kb upstream 1.0kb upstream 5283 true Chr06: 21221120-21226402 Phaseolus vulgaris
Phvul.006G102500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 21221120-21222119 Phaseolus vulgaris
Phvul.006G102500 1.0kb downstream 1.0kb downstream 5283 true Chr06: 21222120-21227402 Phaseolus vulgaris
Phvul.006G102500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 21226403-21227402 Phaseolus vulgaris
Phvul.006G102500 2.0kb upstream 2.0kb upstream 6283 true Chr06: 21220120-21226402 Phaseolus vulgaris
Phvul.006G102500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 21220120-21222119 Phaseolus vulgaris
Phvul.006G102500 2.0kb downstream 2.0kb downstream 6283 true Chr06: 21222120-21228402 Phaseolus vulgaris
Phvul.006G102500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 21226403-21228402 Phaseolus vulgaris
Phvul.006G102500 5.0kb upstream 5.0kb upstream 9283 true Chr06: 21217120-21226402 Phaseolus vulgaris
Phvul.006G102500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 21217120-21222119 Phaseolus vulgaris
Phvul.006G102500 5.0kb downstream 5.0kb downstream 9283 true Chr06: 21222120-21231402 Phaseolus vulgaris
Phvul.006G102500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 21226403-21231402 Phaseolus vulgaris
Phvul.006G102500 10.0kb upstream 10.0kb upstream 14283 true Chr06: 21212120-21226402 Phaseolus vulgaris
Phvul.006G102500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 21212120-21222119 Phaseolus vulgaris
Phvul.006G102500 10.0kb downstream 10.0kb downstream 14283 true Chr06: 21222120-21236402 Phaseolus vulgaris
Phvul.006G102500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 21226403-21236402 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301541 5265 Fabidae View MSA
124061735 5270 Rosid View MSA
123739408 5271 Pentapetalae View MSA
122786845 5272 Eudicot View MSA
122043852 5273 Angiosperm View MSA
121346736 5274 Embryophyte View MSA
123428704 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.2013 0.0 39.126    
cufflinks 11.7406 0.0 41.9473    
cufflinks 10.4708 0.0 36.8185    
cufflinks 8.92068 0.0 28.2173    
cufflinks 9.18931 0.0 34.3375    
cufflinks 8.2084 0.0 25.9871   Low
cufflinks 12.3528 0.0 42.5085    
cufflinks 16.1421 0.0 53.1197   High
cufflinks 11.9038 0.0 41.0995    
cufflinks 11.536 0.0 40.9239    
cufflinks 8.88859 0.0 32.8696    

0 Strain