Gene : Phvul.006G096400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21089//PTHR21089:SF10 - SHIKIMATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  959
Name:  ? Phvul.006G096400 Secondary Identifier:  ? PAC:37173079
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6163 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G096400 0.5kb upstream 0.5kb upstream 12369 true Chr06: 20714325-20726693 Phaseolus vulgaris
Phvul.006G096400 0.5kb upstream 0.5kb upstream 500 false Chr06: 20726194-20726693 Phaseolus vulgaris
Phvul.006G096400 0.5kb downstream 0.5kb downstream 12369 true Chr06: 20713825-20726193 Phaseolus vulgaris
Phvul.006G096400 0.5kb downstream 0.5kb downstream 500 false Chr06: 20713825-20714324 Phaseolus vulgaris
Phvul.006G096400 1.0kb upstream 1.0kb upstream 12869 true Chr06: 20714325-20727193 Phaseolus vulgaris
Phvul.006G096400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 20726194-20727193 Phaseolus vulgaris
Phvul.006G096400 1.0kb downstream 1.0kb downstream 12869 true Chr06: 20713325-20726193 Phaseolus vulgaris
Phvul.006G096400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 20713325-20714324 Phaseolus vulgaris
Phvul.006G096400 2.0kb upstream 2.0kb upstream 13869 true Chr06: 20714325-20728193 Phaseolus vulgaris
Phvul.006G096400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 20726194-20728193 Phaseolus vulgaris
Phvul.006G096400 2.0kb downstream 2.0kb downstream 13869 true Chr06: 20712325-20726193 Phaseolus vulgaris
Phvul.006G096400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 20712325-20714324 Phaseolus vulgaris
Phvul.006G096400 5.0kb upstream 5.0kb upstream 16869 true Chr06: 20714325-20731193 Phaseolus vulgaris
Phvul.006G096400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 20726194-20731193 Phaseolus vulgaris
Phvul.006G096400 5.0kb downstream 5.0kb downstream 16869 true Chr06: 20709325-20726193 Phaseolus vulgaris
Phvul.006G096400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 20709325-20714324 Phaseolus vulgaris
Phvul.006G096400 10.0kb upstream 10.0kb upstream 21869 true Chr06: 20714325-20736193 Phaseolus vulgaris
Phvul.006G096400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 20726194-20736193 Phaseolus vulgaris
Phvul.006G096400 10.0kb downstream 10.0kb downstream 21869 true Chr06: 20704325-20726193 Phaseolus vulgaris
Phvul.006G096400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 20704325-20714324 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
122254087 5265 Fabidae View MSA
124070168 5270 Rosid View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.21485 0.0 17.147    
cufflinks 5.71558 0.0 22.8841    
cufflinks 2.55863 0.0 12.8924    
cufflinks 1.20516 0.0 6.92755   Low
cufflinks 10.7442 0.0 47.3907    
cufflinks 2.6184 0.0 13.2197    
cufflinks 3.55205 0.0 19.6587    
cufflinks 4.24015 0.0 20.9227    
cufflinks 23.5256 0.0 84.2548   High
cufflinks 12.1614 0.0 47.0375   High
cufflinks 3.09941 0.0 17.0547    

0 Strain