Gene : Phvul.006G083300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22904:SF373 - PROTEIN TIC 40, CHLOROPLASTIC Genomic Order:  818
Name:  ? Phvul.006G083300 Secondary Identifier:  ? PAC:37172018
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G083300 0.5kb upstream 0.5kb upstream 9358 true Chr06: 19538954-19548311 Phaseolus vulgaris
Phvul.006G083300 0.5kb upstream 0.5kb upstream 500 false Chr06: 19538954-19539453 Phaseolus vulgaris
Phvul.006G083300 0.5kb downstream 0.5kb downstream 9358 true Chr06: 19539454-19548811 Phaseolus vulgaris
Phvul.006G083300 0.5kb downstream 0.5kb downstream 500 false Chr06: 19548312-19548811 Phaseolus vulgaris
Phvul.006G083300 1.0kb upstream 1.0kb upstream 9858 true Chr06: 19538454-19548311 Phaseolus vulgaris
Phvul.006G083300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 19538454-19539453 Phaseolus vulgaris
Phvul.006G083300 1.0kb downstream 1.0kb downstream 9858 true Chr06: 19539454-19549311 Phaseolus vulgaris
Phvul.006G083300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 19548312-19549311 Phaseolus vulgaris
Phvul.006G083300 2.0kb upstream 2.0kb upstream 10858 true Chr06: 19537454-19548311 Phaseolus vulgaris
Phvul.006G083300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 19537454-19539453 Phaseolus vulgaris
Phvul.006G083300 2.0kb downstream 2.0kb downstream 10858 true Chr06: 19539454-19550311 Phaseolus vulgaris
Phvul.006G083300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 19548312-19550311 Phaseolus vulgaris
Phvul.006G083300 5.0kb upstream 5.0kb upstream 13858 true Chr06: 19534454-19548311 Phaseolus vulgaris
Phvul.006G083300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 19534454-19539453 Phaseolus vulgaris
Phvul.006G083300 5.0kb downstream 5.0kb downstream 13858 true Chr06: 19539454-19553311 Phaseolus vulgaris
Phvul.006G083300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 19548312-19553311 Phaseolus vulgaris
Phvul.006G083300 10.0kb upstream 10.0kb upstream 18858 true Chr06: 19529454-19548311 Phaseolus vulgaris
Phvul.006G083300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 19529454-19539453 Phaseolus vulgaris
Phvul.006G083300 10.0kb downstream 10.0kb downstream 18858 true Chr06: 19539454-19558311 Phaseolus vulgaris
Phvul.006G083300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 19548312-19558311 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306461 5265 Fabidae View MSA
124060602 5270 Rosid View MSA
123738700 5271 Pentapetalae View MSA
122785851 5272 Eudicot View MSA
122043574 5273 Angiosperm View MSA
121344558 5274 Embryophyte View MSA
123424576 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.6131 0.0 70.3635    
cufflinks 27.13 0.0 78.2715    
cufflinks 36.3968 0.0 106.344   High
cufflinks 21.0984 0.0 60.8622    
cufflinks 17.9374 0.0 53.3096    
cufflinks 31.3185 0.0 90.5053   High
cufflinks 13.6793 0.0 41.6011   Low
cufflinks 17.4216 0.0 51.1    
cufflinks 17.508 0.0 51.863    
cufflinks 23.789 0.0 68.2153    
cufflinks 16.1205 0.0 48.6044    

0 Strain