Gene : Phvul.006G084300 P. vulgaris v2.1
Defline:  (1 of 4) PF05757 - Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ) Genomic Order:  828
Name:  ? Phvul.006G084300 Secondary Identifier:  ? PAC:37173470
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G084300 0.5kb upstream 0.5kb upstream 2259 true Chr06: 19591169-19593427 Phaseolus vulgaris
Phvul.006G084300 0.5kb upstream 0.5kb upstream 500 false Chr06: 19591169-19591668 Phaseolus vulgaris
Phvul.006G084300 0.5kb downstream 0.5kb downstream 2259 true Chr06: 19591669-19593927 Phaseolus vulgaris
Phvul.006G084300 0.5kb downstream 0.5kb downstream 500 false Chr06: 19593428-19593927 Phaseolus vulgaris
Phvul.006G084300 1.0kb upstream 1.0kb upstream 2759 true Chr06: 19590669-19593427 Phaseolus vulgaris
Phvul.006G084300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 19590669-19591668 Phaseolus vulgaris
Phvul.006G084300 1.0kb downstream 1.0kb downstream 2759 true Chr06: 19591669-19594427 Phaseolus vulgaris
Phvul.006G084300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 19593428-19594427 Phaseolus vulgaris
Phvul.006G084300 2.0kb upstream 2.0kb upstream 3759 true Chr06: 19589669-19593427 Phaseolus vulgaris
Phvul.006G084300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 19589669-19591668 Phaseolus vulgaris
Phvul.006G084300 2.0kb downstream 2.0kb downstream 3759 true Chr06: 19591669-19595427 Phaseolus vulgaris
Phvul.006G084300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 19593428-19595427 Phaseolus vulgaris
Phvul.006G084300 5.0kb upstream 5.0kb upstream 6759 true Chr06: 19586669-19593427 Phaseolus vulgaris
Phvul.006G084300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 19586669-19591668 Phaseolus vulgaris
Phvul.006G084300 5.0kb downstream 5.0kb downstream 6759 true Chr06: 19591669-19598427 Phaseolus vulgaris
Phvul.006G084300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 19593428-19598427 Phaseolus vulgaris
Phvul.006G084300 10.0kb upstream 10.0kb upstream 11759 true Chr06: 19581669-19593427 Phaseolus vulgaris
Phvul.006G084300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 19581669-19591668 Phaseolus vulgaris
Phvul.006G084300 10.0kb downstream 10.0kb downstream 11759 true Chr06: 19591669-19603427 Phaseolus vulgaris
Phvul.006G084300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 19593428-19603427 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312972 5265 Fabidae View MSA
124068012 5270 Rosid View MSA
123738573 5271 Pentapetalae View MSA
122791762 5272 Eudicot View MSA
122049164 5273 Angiosperm View MSA
121311275 5274 Embryophyte View MSA
123348590 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.62308 0.0 2.41674    
cufflinks 2.90141 0.0 9.75364    
cufflinks 5.91399 0.0 18.251   High
cufflinks 0.762846 0.0 2.92136    
cufflinks 0.320224 0.0 1.31789 Low  
cufflinks 8.39301 0.0 24.9306   High
cufflinks 0.0962583 0.0 0.438263 Low Low
cufflinks 0.0344094 0.0 0.174223 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.263156 0.0 1.09628 Low  
cufflinks 0.747775 0.0 2.87225    

0 Strain