Gene : Phvul.010G143400 P. vulgaris v2.1
Defline:  (1 of 466) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1444
Name:  ? Phvul.010G143400 Secondary Identifier:  ? PAC:37142709
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G143400 0.5kb upstream 0.5kb upstream 3662 true Chr10: 42529992-42533653 Phaseolus vulgaris
Phvul.010G143400 0.5kb upstream 0.5kb upstream 500 false Chr10: 42533154-42533653 Phaseolus vulgaris
Phvul.010G143400 0.5kb downstream 0.5kb downstream 3662 true Chr10: 42529492-42533153 Phaseolus vulgaris
Phvul.010G143400 0.5kb downstream 0.5kb downstream 500 false Chr10: 42529492-42529991 Phaseolus vulgaris
Phvul.010G143400 1.0kb upstream 1.0kb upstream 4162 true Chr10: 42529992-42534153 Phaseolus vulgaris
Phvul.010G143400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 42533154-42534153 Phaseolus vulgaris
Phvul.010G143400 1.0kb downstream 1.0kb downstream 4162 true Chr10: 42528992-42533153 Phaseolus vulgaris
Phvul.010G143400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 42528992-42529991 Phaseolus vulgaris
Phvul.010G143400 2.0kb upstream 2.0kb upstream 5162 true Chr10: 42529992-42535153 Phaseolus vulgaris
Phvul.010G143400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 42533154-42535153 Phaseolus vulgaris
Phvul.010G143400 2.0kb downstream 2.0kb downstream 5162 true Chr10: 42527992-42533153 Phaseolus vulgaris
Phvul.010G143400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 42527992-42529991 Phaseolus vulgaris
Phvul.010G143400 5.0kb upstream 5.0kb upstream 8162 true Chr10: 42529992-42538153 Phaseolus vulgaris
Phvul.010G143400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 42533154-42538153 Phaseolus vulgaris
Phvul.010G143400 5.0kb downstream 5.0kb downstream 8162 true Chr10: 42524992-42533153 Phaseolus vulgaris
Phvul.010G143400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 42524992-42529991 Phaseolus vulgaris
Phvul.010G143400 10.0kb upstream 10.0kb upstream 13162 true Chr10: 42529992-42543153 Phaseolus vulgaris
Phvul.010G143400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 42533154-42543153 Phaseolus vulgaris
Phvul.010G143400 10.0kb downstream 10.0kb downstream 13162 true Chr10: 42519992-42533153 Phaseolus vulgaris
Phvul.010G143400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 42519992-42529991 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309091 5265 Fabidae View MSA
124073519 5270 Rosid View MSA
123739768 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.25452 0.0 19.8099    
cufflinks 5.77814 0.0 19.5765    
cufflinks 11.4961 0.0 61.0406   High
cufflinks 5.58426 0.0 19.6069    
cufflinks 7.40091 0.0 23.4812    
cufflinks 6.94964 0.0 28.5086    
cufflinks 6.28067 0.0 18.1499    
cufflinks 4.5296 0.0 13.7786   Low
cufflinks 6.73052 0.0 19.6672    
cufflinks 6.9186 0.0 23.4973    
cufflinks 6.99956 0.0 22.1992    

0 Strain