Gene : Phvul.006G080500 P. vulgaris v2.1
Defline:  (1 of 10) PTHR27003:SF36 - LEUCINE-RICH REPEAT PROTEIN KINASE-LIKE PROTEIN Genomic Order:  790
Name:  ? Phvul.006G080500 Secondary Identifier:  ? PAC:37174106
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G080500 0.5kb upstream 0.5kb upstream 13939 true Chr06: 19262257-19276195 Phaseolus vulgaris
Phvul.006G080500 0.5kb upstream 0.5kb upstream 500 false Chr06: 19262257-19262756 Phaseolus vulgaris
Phvul.006G080500 0.5kb downstream 0.5kb downstream 13939 true Chr06: 19262757-19276695 Phaseolus vulgaris
Phvul.006G080500 0.5kb downstream 0.5kb downstream 500 false Chr06: 19276196-19276695 Phaseolus vulgaris
Phvul.006G080500 1.0kb upstream 1.0kb upstream 14439 true Chr06: 19261757-19276195 Phaseolus vulgaris
Phvul.006G080500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 19261757-19262756 Phaseolus vulgaris
Phvul.006G080500 1.0kb downstream 1.0kb downstream 14439 true Chr06: 19262757-19277195 Phaseolus vulgaris
Phvul.006G080500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 19276196-19277195 Phaseolus vulgaris
Phvul.006G080500 2.0kb upstream 2.0kb upstream 15439 true Chr06: 19260757-19276195 Phaseolus vulgaris
Phvul.006G080500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 19260757-19262756 Phaseolus vulgaris
Phvul.006G080500 2.0kb downstream 2.0kb downstream 15439 true Chr06: 19262757-19278195 Phaseolus vulgaris
Phvul.006G080500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 19276196-19278195 Phaseolus vulgaris
Phvul.006G080500 5.0kb upstream 5.0kb upstream 18439 true Chr06: 19257757-19276195 Phaseolus vulgaris
Phvul.006G080500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 19257757-19262756 Phaseolus vulgaris
Phvul.006G080500 5.0kb downstream 5.0kb downstream 18439 true Chr06: 19262757-19281195 Phaseolus vulgaris
Phvul.006G080500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 19276196-19281195 Phaseolus vulgaris
Phvul.006G080500 10.0kb upstream 10.0kb upstream 23439 true Chr06: 19252757-19276195 Phaseolus vulgaris
Phvul.006G080500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 19252757-19262756 Phaseolus vulgaris
Phvul.006G080500 10.0kb downstream 10.0kb downstream 23439 true Chr06: 19262757-19286195 Phaseolus vulgaris
Phvul.006G080500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 19276196-19286195 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305444 5265 Fabidae View MSA
124062074 5270 Rosid View MSA
123750521 5271 Pentapetalae View MSA
122786028 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.52251 0.0 22.3721    
cufflinks 6.27104 0.0 16.8153   Low
cufflinks 6.9545 0.0 18.4421   Low
cufflinks 7.8922 0.0 20.9034    
cufflinks 13.2946 0.0 34.423    
cufflinks 7.78125 0.0 20.5362    
cufflinks 16.3829 0.0 42.352   High
cufflinks 14.247 0.0 36.828   High
cufflinks 11.6416 0.0 30.2261    
cufflinks 12.1479 0.0 31.4827    
cufflinks 11.0487 0.0 28.7532    

0 Strain