Gene : Phvul.006G065400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23076:SF70 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 7, CHLOROPLASTIC-RELATED Genomic Order:  633
Name:  ? Phvul.006G065400 Secondary Identifier:  ? PAC:37172643
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G065400 0.5kb upstream 0.5kb upstream 11258 true Chr06: 17599809-17611066 Phaseolus vulgaris
Phvul.006G065400 0.5kb upstream 0.5kb upstream 500 false Chr06: 17610567-17611066 Phaseolus vulgaris
Phvul.006G065400 0.5kb downstream 0.5kb downstream 11258 true Chr06: 17599309-17610566 Phaseolus vulgaris
Phvul.006G065400 0.5kb downstream 0.5kb downstream 500 false Chr06: 17599309-17599808 Phaseolus vulgaris
Phvul.006G065400 1.0kb upstream 1.0kb upstream 11758 true Chr06: 17599809-17611566 Phaseolus vulgaris
Phvul.006G065400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 17610567-17611566 Phaseolus vulgaris
Phvul.006G065400 1.0kb downstream 1.0kb downstream 11758 true Chr06: 17598809-17610566 Phaseolus vulgaris
Phvul.006G065400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 17598809-17599808 Phaseolus vulgaris
Phvul.006G065400 2.0kb upstream 2.0kb upstream 12758 true Chr06: 17599809-17612566 Phaseolus vulgaris
Phvul.006G065400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 17610567-17612566 Phaseolus vulgaris
Phvul.006G065400 2.0kb downstream 2.0kb downstream 12758 true Chr06: 17597809-17610566 Phaseolus vulgaris
Phvul.006G065400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 17597809-17599808 Phaseolus vulgaris
Phvul.006G065400 5.0kb upstream 5.0kb upstream 15758 true Chr06: 17599809-17615566 Phaseolus vulgaris
Phvul.006G065400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 17610567-17615566 Phaseolus vulgaris
Phvul.006G065400 5.0kb downstream 5.0kb downstream 15758 true Chr06: 17594809-17610566 Phaseolus vulgaris
Phvul.006G065400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 17594809-17599808 Phaseolus vulgaris
Phvul.006G065400 10.0kb upstream 10.0kb upstream 20758 true Chr06: 17599809-17620566 Phaseolus vulgaris
Phvul.006G065400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 17610567-17620566 Phaseolus vulgaris
Phvul.006G065400 10.0kb downstream 10.0kb downstream 20758 true Chr06: 17589809-17610566 Phaseolus vulgaris
Phvul.006G065400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 17589809-17599808 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122787549 5272 Eudicot View MSA
122297668 5265 Fabidae View MSA
124036109 5270 Rosid View MSA
123748057 5271 Pentapetalae View MSA
122042272 5273 Angiosperm View MSA
121349711 5274 Embryophyte View MSA
123424503 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.5006 0.0 32.3116   Low
cufflinks 15.9125 0.0 41.2299    
cufflinks 17.7007 0.0 45.9714    
cufflinks 9.98776 0.0 25.927   Low
cufflinks 21.9928 0.0 57.6106    
cufflinks 17.393 0.0 45.161    
cufflinks 26.5654 0.0 70.5018   High
cufflinks 19.9432 0.0 52.073    
cufflinks 23.0086 0.0 60.4213    
cufflinks 26.8166 0.0 71.2329   High
cufflinks 19.6965 0.0 51.3597    

0 Strain