Gene : Phvul.006G071500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23083//PTHR23083:SF408 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED Genomic Order:  698
Name:  ? Phvul.006G071500 Secondary Identifier:  ? PAC:37172203
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Ontology Annotation Displayer

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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G071500 0.5kb upstream 0.5kb upstream 5025 true Chr06: 18400009-18405033 Phaseolus vulgaris
Phvul.006G071500 0.5kb upstream 0.5kb upstream 500 false Chr06: 18400009-18400508 Phaseolus vulgaris
Phvul.006G071500 0.5kb downstream 0.5kb downstream 5025 true Chr06: 18400509-18405533 Phaseolus vulgaris
Phvul.006G071500 0.5kb downstream 0.5kb downstream 500 false Chr06: 18405034-18405533 Phaseolus vulgaris
Phvul.006G071500 1.0kb upstream 1.0kb upstream 5525 true Chr06: 18399509-18405033 Phaseolus vulgaris
Phvul.006G071500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 18399509-18400508 Phaseolus vulgaris
Phvul.006G071500 1.0kb downstream 1.0kb downstream 5525 true Chr06: 18400509-18406033 Phaseolus vulgaris
Phvul.006G071500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 18405034-18406033 Phaseolus vulgaris
Phvul.006G071500 2.0kb upstream 2.0kb upstream 6525 true Chr06: 18398509-18405033 Phaseolus vulgaris
Phvul.006G071500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 18398509-18400508 Phaseolus vulgaris
Phvul.006G071500 2.0kb downstream 2.0kb downstream 6525 true Chr06: 18400509-18407033 Phaseolus vulgaris
Phvul.006G071500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 18405034-18407033 Phaseolus vulgaris
Phvul.006G071500 5.0kb upstream 5.0kb upstream 9525 true Chr06: 18395509-18405033 Phaseolus vulgaris
Phvul.006G071500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 18395509-18400508 Phaseolus vulgaris
Phvul.006G071500 5.0kb downstream 5.0kb downstream 9525 true Chr06: 18400509-18410033 Phaseolus vulgaris
Phvul.006G071500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 18405034-18410033 Phaseolus vulgaris
Phvul.006G071500 10.0kb upstream 10.0kb upstream 14525 true Chr06: 18390509-18405033 Phaseolus vulgaris
Phvul.006G071500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 18390509-18400508 Phaseolus vulgaris
Phvul.006G071500 10.0kb downstream 10.0kb downstream 14525 true Chr06: 18400509-18415033 Phaseolus vulgaris
Phvul.006G071500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 18405034-18415033 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311860 5265 Fabidae View MSA
124070940 5270 Rosid View MSA
123743745 5271 Pentapetalae View MSA
122791061 5272 Eudicot View MSA
122041529 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.515948 0.0 1.73236   Low
cufflinks 1.91477 0.0 5.53015    
cufflinks 1.70776 0.0 4.98361    
cufflinks 2.0315 0.0 5.89404    
cufflinks 7.76576 0.0 20.2202    
cufflinks 1.98797 0.0 5.71419    
cufflinks 17.8343 0.0 46.7125   High
cufflinks 46.8059 0.0 134.243 High High
cufflinks 19.8301 0.0 52.1852   High
cufflinks 0.750063 0.0 2.41598   Low
cufflinks 7.64118 0.0 19.8831    

0 Strain