Gene : Phvul.006G185300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11771//PTHR11771:SF56 - LIPOXYGENASE // SUBFAMILY NOT NAMED Genomic Order:  1866
Name:  ? Phvul.006G185300 Secondary Identifier:  ? PAC:37173914
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5409 Phaseolus vulgaris pathologic  
Pvulgaris PWY-735 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G185300 0.5kb upstream 0.5kb upstream 5481 true Chr06: 28642946-28648426 Phaseolus vulgaris
Phvul.006G185300 0.5kb upstream 0.5kb upstream 500 false Chr06: 28647927-28648426 Phaseolus vulgaris
Phvul.006G185300 0.5kb downstream 0.5kb downstream 5481 true Chr06: 28642446-28647926 Phaseolus vulgaris
Phvul.006G185300 0.5kb downstream 0.5kb downstream 500 false Chr06: 28642446-28642945 Phaseolus vulgaris
Phvul.006G185300 1.0kb upstream 1.0kb upstream 5981 true Chr06: 28642946-28648926 Phaseolus vulgaris
Phvul.006G185300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28647927-28648926 Phaseolus vulgaris
Phvul.006G185300 1.0kb downstream 1.0kb downstream 5981 true Chr06: 28641946-28647926 Phaseolus vulgaris
Phvul.006G185300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28641946-28642945 Phaseolus vulgaris
Phvul.006G185300 2.0kb upstream 2.0kb upstream 6981 true Chr06: 28642946-28649926 Phaseolus vulgaris
Phvul.006G185300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28647927-28649926 Phaseolus vulgaris
Phvul.006G185300 2.0kb downstream 2.0kb downstream 6981 true Chr06: 28640946-28647926 Phaseolus vulgaris
Phvul.006G185300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28640946-28642945 Phaseolus vulgaris
Phvul.006G185300 5.0kb upstream 5.0kb upstream 9981 true Chr06: 28642946-28652926 Phaseolus vulgaris
Phvul.006G185300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28647927-28652926 Phaseolus vulgaris
Phvul.006G185300 5.0kb downstream 5.0kb downstream 9981 true Chr06: 28637946-28647926 Phaseolus vulgaris
Phvul.006G185300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28637946-28642945 Phaseolus vulgaris
Phvul.006G185300 10.0kb upstream 10.0kb upstream 14981 true Chr06: 28642946-28657926 Phaseolus vulgaris
Phvul.006G185300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28647927-28657926 Phaseolus vulgaris
Phvul.006G185300 10.0kb downstream 10.0kb downstream 14981 true Chr06: 28632946-28647926 Phaseolus vulgaris
Phvul.006G185300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28632946-28642945 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313954 5265 Fabidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.29281 0.0 9.83282    
cufflinks 6.69297 0.0 25.5205    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.99305 0.0 7.99577    
cufflinks 0.11122 0.0 0.444163 Low  
cufflinks 2.91039 0.0 13.6382    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0109045 0.0 0.0597654 Low Low
cufflinks 3.82872 0.0 15.0757    

0 Strain