Gene : Phvul.006G183400 P. vulgaris v2.1
Defline:  (1 of 45) PF00642 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Genomic Order:  1847
Name:  ? Phvul.006G183400 Secondary Identifier:  ? PAC:37171359
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G183400 0.5kb upstream 0.5kb upstream 15099 true Chr06: 28465132-28480230 Phaseolus vulgaris
Phvul.006G183400 0.5kb upstream 0.5kb upstream 500 false Chr06: 28465132-28465631 Phaseolus vulgaris
Phvul.006G183400 0.5kb downstream 0.5kb downstream 15099 true Chr06: 28465632-28480730 Phaseolus vulgaris
Phvul.006G183400 0.5kb downstream 0.5kb downstream 500 false Chr06: 28480231-28480730 Phaseolus vulgaris
Phvul.006G183400 1.0kb upstream 1.0kb upstream 15599 true Chr06: 28464632-28480230 Phaseolus vulgaris
Phvul.006G183400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28464632-28465631 Phaseolus vulgaris
Phvul.006G183400 1.0kb downstream 1.0kb downstream 15599 true Chr06: 28465632-28481230 Phaseolus vulgaris
Phvul.006G183400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28480231-28481230 Phaseolus vulgaris
Phvul.006G183400 2.0kb upstream 2.0kb upstream 16599 true Chr06: 28463632-28480230 Phaseolus vulgaris
Phvul.006G183400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28463632-28465631 Phaseolus vulgaris
Phvul.006G183400 2.0kb downstream 2.0kb downstream 16599 true Chr06: 28465632-28482230 Phaseolus vulgaris
Phvul.006G183400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28480231-28482230 Phaseolus vulgaris
Phvul.006G183400 5.0kb upstream 5.0kb upstream 19599 true Chr06: 28460632-28480230 Phaseolus vulgaris
Phvul.006G183400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28460632-28465631 Phaseolus vulgaris
Phvul.006G183400 5.0kb downstream 5.0kb downstream 19599 true Chr06: 28465632-28485230 Phaseolus vulgaris
Phvul.006G183400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28480231-28485230 Phaseolus vulgaris
Phvul.006G183400 10.0kb upstream 10.0kb upstream 24599 true Chr06: 28455632-28480230 Phaseolus vulgaris
Phvul.006G183400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28455632-28465631 Phaseolus vulgaris
Phvul.006G183400 10.0kb downstream 10.0kb downstream 24599 true Chr06: 28465632-28490230 Phaseolus vulgaris
Phvul.006G183400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28480231-28490230 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304638 5265 Fabidae View MSA
124062479 5270 Rosid View MSA
123743677 5271 Pentapetalae View MSA
122786281 5272 Eudicot View MSA
122049503 5273 Angiosperm View MSA
121348511 5274 Embryophyte View MSA
123426548 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.51958 0.0 7.94478   Low
cufflinks 4.16257 0.0 12.1846    
cufflinks 8.12834 0.0 22.6738    
cufflinks 2.13416 0.0 7.14678   Low
cufflinks 3.89189 0.0 11.7705    
cufflinks 8.07327 0.0 22.4824    
cufflinks 7.46211 0.0 20.8276    
cufflinks 7.70548 0.0 21.5228    
cufflinks 6.67443 0.0 18.5759    
cufflinks 8.29233 0.0 23.0902    
cufflinks 2.94622 0.0 9.23993   Low

0 Strain