Gene : Phvul.009G084300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23240//PTHR23240:SF10 - DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED // SUBFAMILY NOT NAMED Genomic Order:  867
Name:  ? Phvul.009G084300 Secondary Identifier:  ? PAC:37150902
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G084300 0.5kb upstream 0.5kb upstream 8875 true Chr09: 13750505-13759379 Phaseolus vulgaris
Phvul.009G084300 0.5kb upstream 0.5kb upstream 500 false Chr09: 13750505-13751004 Phaseolus vulgaris
Phvul.009G084300 0.5kb downstream 0.5kb downstream 8875 true Chr09: 13751005-13759879 Phaseolus vulgaris
Phvul.009G084300 0.5kb downstream 0.5kb downstream 500 false Chr09: 13759380-13759879 Phaseolus vulgaris
Phvul.009G084300 1.0kb upstream 1.0kb upstream 9375 true Chr09: 13750005-13759379 Phaseolus vulgaris
Phvul.009G084300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 13750005-13751004 Phaseolus vulgaris
Phvul.009G084300 1.0kb downstream 1.0kb downstream 9375 true Chr09: 13751005-13760379 Phaseolus vulgaris
Phvul.009G084300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 13759380-13760379 Phaseolus vulgaris
Phvul.009G084300 2.0kb upstream 2.0kb upstream 10375 true Chr09: 13749005-13759379 Phaseolus vulgaris
Phvul.009G084300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 13749005-13751004 Phaseolus vulgaris
Phvul.009G084300 2.0kb downstream 2.0kb downstream 10375 true Chr09: 13751005-13761379 Phaseolus vulgaris
Phvul.009G084300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 13759380-13761379 Phaseolus vulgaris
Phvul.009G084300 5.0kb upstream 5.0kb upstream 13375 true Chr09: 13746005-13759379 Phaseolus vulgaris
Phvul.009G084300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 13746005-13751004 Phaseolus vulgaris
Phvul.009G084300 5.0kb downstream 5.0kb downstream 13375 true Chr09: 13751005-13764379 Phaseolus vulgaris
Phvul.009G084300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 13759380-13764379 Phaseolus vulgaris
Phvul.009G084300 10.0kb upstream 10.0kb upstream 18375 true Chr09: 13741005-13759379 Phaseolus vulgaris
Phvul.009G084300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 13741005-13751004 Phaseolus vulgaris
Phvul.009G084300 10.0kb downstream 10.0kb downstream 18375 true Chr09: 13751005-13769379 Phaseolus vulgaris
Phvul.009G084300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 13759380-13769379 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308726 5265 Fabidae View MSA
124066680 5270 Rosid View MSA
123739588 5271 Pentapetalae View MSA
122791348 5272 Eudicot View MSA
122046861 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.815667 0.0 2.7957    
cufflinks 3.09417 0.0 9.13506    
cufflinks 1.07449 0.0 3.57681    
cufflinks 1.01817 0.0 3.43039    
cufflinks 1.63039 0.0 5.20766    
cufflinks 2.30459 0.0 7.03926    
cufflinks 2.30863 0.0 7.04702    
cufflinks 2.0065 0.0 6.20897    
cufflinks 3.1639 0.0 9.32449    
cufflinks 0.0869467 0.0 0.36221 Low Low
cufflinks 1.42463 0.0 4.60962    

0 Strain