Gene : Phvul.006G179400 P. vulgaris v2.1
Defline:  (1 of 1) K07560 - D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] (dtd, DTD1) Genomic Order:  1807
Name:  ? Phvul.006G179400 Secondary Identifier:  ? PAC:37171480
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G179400 0.5kb upstream 0.5kb upstream 3372 true Chr06: 28141788-28145159 Phaseolus vulgaris
Phvul.006G179400 0.5kb upstream 0.5kb upstream 500 false Chr06: 28141788-28142287 Phaseolus vulgaris
Phvul.006G179400 0.5kb downstream 0.5kb downstream 3372 true Chr06: 28142288-28145659 Phaseolus vulgaris
Phvul.006G179400 0.5kb downstream 0.5kb downstream 500 false Chr06: 28145160-28145659 Phaseolus vulgaris
Phvul.006G179400 1.0kb upstream 1.0kb upstream 3872 true Chr06: 28141288-28145159 Phaseolus vulgaris
Phvul.006G179400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28141288-28142287 Phaseolus vulgaris
Phvul.006G179400 1.0kb downstream 1.0kb downstream 3872 true Chr06: 28142288-28146159 Phaseolus vulgaris
Phvul.006G179400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28145160-28146159 Phaseolus vulgaris
Phvul.006G179400 2.0kb upstream 2.0kb upstream 4872 true Chr06: 28140288-28145159 Phaseolus vulgaris
Phvul.006G179400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28140288-28142287 Phaseolus vulgaris
Phvul.006G179400 2.0kb downstream 2.0kb downstream 4872 true Chr06: 28142288-28147159 Phaseolus vulgaris
Phvul.006G179400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28145160-28147159 Phaseolus vulgaris
Phvul.006G179400 5.0kb upstream 5.0kb upstream 7872 true Chr06: 28137288-28145159 Phaseolus vulgaris
Phvul.006G179400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28137288-28142287 Phaseolus vulgaris
Phvul.006G179400 5.0kb downstream 5.0kb downstream 7872 true Chr06: 28142288-28150159 Phaseolus vulgaris
Phvul.006G179400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28145160-28150159 Phaseolus vulgaris
Phvul.006G179400 10.0kb upstream 10.0kb upstream 12872 true Chr06: 28132288-28145159 Phaseolus vulgaris
Phvul.006G179400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28132288-28142287 Phaseolus vulgaris
Phvul.006G179400 10.0kb downstream 10.0kb downstream 12872 true Chr06: 28142288-28155159 Phaseolus vulgaris
Phvul.006G179400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28145160-28155159 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306006 5265 Fabidae View MSA
124067908 5270 Rosid View MSA
123739614 5271 Pentapetalae View MSA
122785826 5272 Eudicot View MSA
122044968 5273 Angiosperm View MSA
121347262 5274 Embryophyte View MSA
123424292 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.78989 0.0 14.8813    
cufflinks 8.60542 0.0 24.9883   High
cufflinks 7.45638 0.0 22.0833    
cufflinks 3.37084 0.0 10.9276   Low
cufflinks 7.04644 0.0 21.0345    
cufflinks 8.18816 0.0 23.9176   High
cufflinks 3.41594 0.0 10.9917   Low
cufflinks 6.27269 0.0 18.7876    
cufflinks 3.43756 0.0 11.057    
cufflinks 2.85652 0.0 9.39783   Low
cufflinks 5.21174 0.0 16.0457    

0 Strain