Gene : Phvul.006G180900 P. vulgaris v2.1
Defline:  (1 of 7) PTHR11746//PTHR11746:SF78 - O-METHYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  1822
Name:  ? Phvul.006G180900 Secondary Identifier:  ? PAC:37173441
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G180900 0.5kb upstream 0.5kb upstream 1896 true Chr06: 28252023-28253918 Phaseolus vulgaris
Phvul.006G180900 0.5kb upstream 0.5kb upstream 500 false Chr06: 28252023-28252522 Phaseolus vulgaris
Phvul.006G180900 0.5kb downstream 0.5kb downstream 1896 true Chr06: 28252523-28254418 Phaseolus vulgaris
Phvul.006G180900 0.5kb downstream 0.5kb downstream 500 false Chr06: 28253919-28254418 Phaseolus vulgaris
Phvul.006G180900 1.0kb upstream 1.0kb upstream 2396 true Chr06: 28251523-28253918 Phaseolus vulgaris
Phvul.006G180900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28251523-28252522 Phaseolus vulgaris
Phvul.006G180900 1.0kb downstream 1.0kb downstream 2396 true Chr06: 28252523-28254918 Phaseolus vulgaris
Phvul.006G180900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28253919-28254918 Phaseolus vulgaris
Phvul.006G180900 2.0kb upstream 2.0kb upstream 3396 true Chr06: 28250523-28253918 Phaseolus vulgaris
Phvul.006G180900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28250523-28252522 Phaseolus vulgaris
Phvul.006G180900 2.0kb downstream 2.0kb downstream 3396 true Chr06: 28252523-28255918 Phaseolus vulgaris
Phvul.006G180900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28253919-28255918 Phaseolus vulgaris
Phvul.006G180900 5.0kb upstream 5.0kb upstream 6396 true Chr06: 28247523-28253918 Phaseolus vulgaris
Phvul.006G180900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28247523-28252522 Phaseolus vulgaris
Phvul.006G180900 5.0kb downstream 5.0kb downstream 6396 true Chr06: 28252523-28258918 Phaseolus vulgaris
Phvul.006G180900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28253919-28258918 Phaseolus vulgaris
Phvul.006G180900 10.0kb upstream 10.0kb upstream 11396 true Chr06: 28242523-28253918 Phaseolus vulgaris
Phvul.006G180900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28242523-28252522 Phaseolus vulgaris
Phvul.006G180900 10.0kb downstream 10.0kb downstream 11396 true Chr06: 28252523-28263918 Phaseolus vulgaris
Phvul.006G180900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28253919-28263918 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314329 5265 Fabidae View MSA
124071717 5270 Rosid View MSA
123750281 5271 Pentapetalae View MSA
122794018 5272 Eudicot View MSA
122050650 5273 Angiosperm View MSA
123429068 5275 Viridiplantae View MSA
121350689 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.53362 0.0 5.23555    
cufflinks 5.29514 0.0 15.6999    
cufflinks 0.365316 0.0 1.41788 Low Low
cufflinks 2.80228 0.0 9.0433    
cufflinks 1.47783 0.0 5.10624    
cufflinks 3.11763 0.0 9.82318    
cufflinks 4.35132 0.0 13.2052    
cufflinks 2.99999 0.0 9.45927    
cufflinks 9.70663 0.0 27.1491   High
cufflinks 0.22742 0.0 0.918826 Low Low
cufflinks 5.34386 0.0 15.9073    

0 Strain