Gene : Phvul.009G066000 P. vulgaris v2.1
Defline:  (1 of 1) K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) Genomic Order:  672
Name:  ? Phvul.009G066000 Secondary Identifier:  ? PAC:37149267
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G066000 0.5kb upstream 0.5kb upstream 8436 true Chr09: 11603989-11612424 Phaseolus vulgaris
Phvul.009G066000 0.5kb upstream 0.5kb upstream 500 false Chr09: 11611925-11612424 Phaseolus vulgaris
Phvul.009G066000 0.5kb downstream 0.5kb downstream 8436 true Chr09: 11603489-11611924 Phaseolus vulgaris
Phvul.009G066000 0.5kb downstream 0.5kb downstream 500 false Chr09: 11603489-11603988 Phaseolus vulgaris
Phvul.009G066000 1.0kb upstream 1.0kb upstream 8936 true Chr09: 11603989-11612924 Phaseolus vulgaris
Phvul.009G066000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 11611925-11612924 Phaseolus vulgaris
Phvul.009G066000 1.0kb downstream 1.0kb downstream 8936 true Chr09: 11602989-11611924 Phaseolus vulgaris
Phvul.009G066000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 11602989-11603988 Phaseolus vulgaris
Phvul.009G066000 2.0kb upstream 2.0kb upstream 9936 true Chr09: 11603989-11613924 Phaseolus vulgaris
Phvul.009G066000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 11611925-11613924 Phaseolus vulgaris
Phvul.009G066000 2.0kb downstream 2.0kb downstream 9936 true Chr09: 11601989-11611924 Phaseolus vulgaris
Phvul.009G066000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 11601989-11603988 Phaseolus vulgaris
Phvul.009G066000 5.0kb upstream 5.0kb upstream 12936 true Chr09: 11603989-11616924 Phaseolus vulgaris
Phvul.009G066000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 11611925-11616924 Phaseolus vulgaris
Phvul.009G066000 5.0kb downstream 5.0kb downstream 12936 true Chr09: 11598989-11611924 Phaseolus vulgaris
Phvul.009G066000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 11598989-11603988 Phaseolus vulgaris
Phvul.009G066000 10.0kb upstream 10.0kb upstream 17936 true Chr09: 11603989-11621924 Phaseolus vulgaris
Phvul.009G066000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 11611925-11621924 Phaseolus vulgaris
Phvul.009G066000 10.0kb downstream 10.0kb downstream 17936 true Chr09: 11593989-11611924 Phaseolus vulgaris
Phvul.009G066000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 11593989-11603988 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304615 5265 Fabidae View MSA
124061889 5270 Rosid View MSA
123751364 5271 Pentapetalae View MSA
122793070 5272 Eudicot View MSA
122041627 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351500 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.8815 0.0 34.966   Low
cufflinks 14.2626 0.0 47.4354    
cufflinks 22.3656 0.0 65.3994   High
cufflinks 9.62613 0.0 31.4776   Low
cufflinks 16.2358 0.0 54.3098    
cufflinks 17.5863 0.0 57.3235    
cufflinks 13.0636 0.0 41.7019    
cufflinks 12.044 0.0 38.5179    
cufflinks 15.9321 0.0 50.6367    
cufflinks 21.263 0.0 61.1401   High
cufflinks 14.3838 0.0 41.8165    

0 Strain