Gene : Phvul.006G165600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  1653
Name:  ? Phvul.006G165600 Secondary Identifier:  ? PAC:37173737
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5173 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PYRUVDEHYD-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G165600 0.5kb upstream 0.5kb upstream 3465 true Chr06: 26865725-26869189 Phaseolus vulgaris
Phvul.006G165600 0.5kb upstream 0.5kb upstream 500 false Chr06: 26868690-26869189 Phaseolus vulgaris
Phvul.006G165600 0.5kb downstream 0.5kb downstream 3465 true Chr06: 26865225-26868689 Phaseolus vulgaris
Phvul.006G165600 0.5kb downstream 0.5kb downstream 500 false Chr06: 26865225-26865724 Phaseolus vulgaris
Phvul.006G165600 1.0kb upstream 1.0kb upstream 3965 true Chr06: 26865725-26869689 Phaseolus vulgaris
Phvul.006G165600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 26868690-26869689 Phaseolus vulgaris
Phvul.006G165600 1.0kb downstream 1.0kb downstream 3965 true Chr06: 26864725-26868689 Phaseolus vulgaris
Phvul.006G165600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 26864725-26865724 Phaseolus vulgaris
Phvul.006G165600 2.0kb upstream 2.0kb upstream 4965 true Chr06: 26865725-26870689 Phaseolus vulgaris
Phvul.006G165600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 26868690-26870689 Phaseolus vulgaris
Phvul.006G165600 2.0kb downstream 2.0kb downstream 4965 true Chr06: 26863725-26868689 Phaseolus vulgaris
Phvul.006G165600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 26863725-26865724 Phaseolus vulgaris
Phvul.006G165600 5.0kb upstream 5.0kb upstream 7965 true Chr06: 26865725-26873689 Phaseolus vulgaris
Phvul.006G165600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 26868690-26873689 Phaseolus vulgaris
Phvul.006G165600 5.0kb downstream 5.0kb downstream 7965 true Chr06: 26860725-26868689 Phaseolus vulgaris
Phvul.006G165600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 26860725-26865724 Phaseolus vulgaris
Phvul.006G165600 10.0kb upstream 10.0kb upstream 12965 true Chr06: 26865725-26878689 Phaseolus vulgaris
Phvul.006G165600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 26868690-26878689 Phaseolus vulgaris
Phvul.006G165600 10.0kb downstream 10.0kb downstream 12965 true Chr06: 26855725-26868689 Phaseolus vulgaris
Phvul.006G165600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 26855725-26865724 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306477 5265 Fabidae View MSA
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.75 0.0 74.3371    
cufflinks 50.7876 0.0 134.053 High  
cufflinks 90.7333 0.0 252.379 High High
cufflinks 132.813 0.0 383.915 High High
cufflinks 45.8956 0.0 120.302 High  
cufflinks 91.1182 0.0 253.091 High High
cufflinks 23.7577 0.0 61.4205   Low
cufflinks 26.3202 0.0 68.0362    
cufflinks 37.2127 0.0 96.7485 High  
cufflinks 20.7467 0.0 53.7543   Low
cufflinks 53.0602 0.0 140.318 High  

0 Strain