Gene : Phvul.009G055700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12313//PTHR12313:SF10 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  563
Name:  ? Phvul.009G055700 Secondary Identifier:  ? PAC:37151959
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G055700 0.5kb upstream 0.5kb upstream 2167 true Chr09: 10587044-10589210 Phaseolus vulgaris
Phvul.009G055700 0.5kb upstream 0.5kb upstream 500 false Chr09: 10588711-10589210 Phaseolus vulgaris
Phvul.009G055700 0.5kb downstream 0.5kb downstream 2167 true Chr09: 10586544-10588710 Phaseolus vulgaris
Phvul.009G055700 0.5kb downstream 0.5kb downstream 500 false Chr09: 10586544-10587043 Phaseolus vulgaris
Phvul.009G055700 1.0kb upstream 1.0kb upstream 2667 true Chr09: 10587044-10589710 Phaseolus vulgaris
Phvul.009G055700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 10588711-10589710 Phaseolus vulgaris
Phvul.009G055700 1.0kb downstream 1.0kb downstream 2667 true Chr09: 10586044-10588710 Phaseolus vulgaris
Phvul.009G055700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 10586044-10587043 Phaseolus vulgaris
Phvul.009G055700 2.0kb upstream 2.0kb upstream 3667 true Chr09: 10587044-10590710 Phaseolus vulgaris
Phvul.009G055700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 10588711-10590710 Phaseolus vulgaris
Phvul.009G055700 2.0kb downstream 2.0kb downstream 3667 true Chr09: 10585044-10588710 Phaseolus vulgaris
Phvul.009G055700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 10585044-10587043 Phaseolus vulgaris
Phvul.009G055700 5.0kb upstream 5.0kb upstream 6667 true Chr09: 10587044-10593710 Phaseolus vulgaris
Phvul.009G055700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 10588711-10593710 Phaseolus vulgaris
Phvul.009G055700 5.0kb downstream 5.0kb downstream 6667 true Chr09: 10582044-10588710 Phaseolus vulgaris
Phvul.009G055700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 10582044-10587043 Phaseolus vulgaris
Phvul.009G055700 10.0kb upstream 10.0kb upstream 11667 true Chr09: 10587044-10598710 Phaseolus vulgaris
Phvul.009G055700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 10588711-10598710 Phaseolus vulgaris
Phvul.009G055700 10.0kb downstream 10.0kb downstream 11667 true Chr09: 10577044-10588710 Phaseolus vulgaris
Phvul.009G055700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 10577044-10587043 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303958 5265 Fabidae View MSA
124066658 5270 Rosid View MSA
123750017 5271 Pentapetalae View MSA
122793132 5272 Eudicot View MSA
122043579 5273 Angiosperm View MSA
121350090 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.6754 0.0 82.349   High
cufflinks 21.0641 0.0 56.2935    
cufflinks 7.97693 0.0 23.2009   Low
cufflinks 34.9881 0.0 90.8204 High High
cufflinks 12.1983 0.0 33.9756    
cufflinks 10.3104 0.0 29.3   Low
cufflinks 13.5558 0.0 37.5206    
cufflinks 13.244 0.0 36.6333    
cufflinks 16.6279 0.0 45.3972    
cufflinks 25.2313 0.0 66.5416    
cufflinks 15.4068 0.0 42.2519    

0 Strain