Gene : Phvul.009G043500 P. vulgaris v2.1
Defline:  (1 of 1) K15437 - aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (AIMP1, ARC1) Genomic Order:  435
Name:  ? Phvul.009G043500 Secondary Identifier:  ? PAC:37150070
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G043500 0.5kb upstream 0.5kb upstream 8495 true Chr09: 8724821-8733315 Phaseolus vulgaris
Phvul.009G043500 0.5kb upstream 0.5kb upstream 500 false Chr09: 8732816-8733315 Phaseolus vulgaris
Phvul.009G043500 0.5kb downstream 0.5kb downstream 8495 true Chr09: 8724321-8732815 Phaseolus vulgaris
Phvul.009G043500 0.5kb downstream 0.5kb downstream 500 false Chr09: 8724321-8724820 Phaseolus vulgaris
Phvul.009G043500 1.0kb upstream 1.0kb upstream 8995 true Chr09: 8724821-8733815 Phaseolus vulgaris
Phvul.009G043500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 8732816-8733815 Phaseolus vulgaris
Phvul.009G043500 1.0kb downstream 1.0kb downstream 8995 true Chr09: 8723821-8732815 Phaseolus vulgaris
Phvul.009G043500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 8723821-8724820 Phaseolus vulgaris
Phvul.009G043500 2.0kb upstream 2.0kb upstream 9995 true Chr09: 8724821-8734815 Phaseolus vulgaris
Phvul.009G043500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 8732816-8734815 Phaseolus vulgaris
Phvul.009G043500 2.0kb downstream 2.0kb downstream 9995 true Chr09: 8722821-8732815 Phaseolus vulgaris
Phvul.009G043500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 8722821-8724820 Phaseolus vulgaris
Phvul.009G043500 5.0kb upstream 5.0kb upstream 12995 true Chr09: 8724821-8737815 Phaseolus vulgaris
Phvul.009G043500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 8732816-8737815 Phaseolus vulgaris
Phvul.009G043500 5.0kb downstream 5.0kb downstream 12995 true Chr09: 8719821-8732815 Phaseolus vulgaris
Phvul.009G043500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 8719821-8724820 Phaseolus vulgaris
Phvul.009G043500 10.0kb upstream 10.0kb upstream 17995 true Chr09: 8724821-8742815 Phaseolus vulgaris
Phvul.009G043500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 8732816-8742815 Phaseolus vulgaris
Phvul.009G043500 10.0kb downstream 10.0kb downstream 17995 true Chr09: 8714821-8732815 Phaseolus vulgaris
Phvul.009G043500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 8714821-8724820 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306862 5265 Fabidae View MSA
124063262 5270 Rosid View MSA
123740350 5271 Pentapetalae View MSA
122787501 5272 Eudicot View MSA
122043552 5273 Angiosperm View MSA
121350669 5274 Embryophyte View MSA
123427531 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.9968 0.0 34.2411    
cufflinks 22.4347 0.0 58.0153   High
cufflinks 13.4043 0.0 35.2023    
cufflinks 11.4291 0.0 30.5856   Low
cufflinks 14.5146 0.0 38.2149    
cufflinks 13.9222 0.0 36.5088    
cufflinks 15.5988 0.0 40.6205    
cufflinks 17.2408 0.0 44.7014    
cufflinks 18.127 0.0 47.0226    
cufflinks 12.6032 0.0 33.3221    
cufflinks 18.4123 0.0 47.8292    

0 Strain