Gene : Phvul.009G035100 P. vulgaris v2.1
Defline:  (1 of 1) K14765 - U3 small nucleolar ribonucleoprotein protein LCP5 (NGDN, LCP5) Genomic Order:  350
Name:  ? Phvul.009G035100 Secondary Identifier:  ? PAC:37148655
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G035100 0.5kb upstream 0.5kb upstream 3849 true Chr09: 7703487-7707335 Phaseolus vulgaris
Phvul.009G035100 0.5kb upstream 0.5kb upstream 500 false Chr09: 7706836-7707335 Phaseolus vulgaris
Phvul.009G035100 0.5kb downstream 0.5kb downstream 3849 true Chr09: 7702987-7706835 Phaseolus vulgaris
Phvul.009G035100 0.5kb downstream 0.5kb downstream 500 false Chr09: 7702987-7703486 Phaseolus vulgaris
Phvul.009G035100 1.0kb upstream 1.0kb upstream 4349 true Chr09: 7703487-7707835 Phaseolus vulgaris
Phvul.009G035100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 7706836-7707835 Phaseolus vulgaris
Phvul.009G035100 1.0kb downstream 1.0kb downstream 4349 true Chr09: 7702487-7706835 Phaseolus vulgaris
Phvul.009G035100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 7702487-7703486 Phaseolus vulgaris
Phvul.009G035100 2.0kb upstream 2.0kb upstream 5349 true Chr09: 7703487-7708835 Phaseolus vulgaris
Phvul.009G035100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 7706836-7708835 Phaseolus vulgaris
Phvul.009G035100 2.0kb downstream 2.0kb downstream 5349 true Chr09: 7701487-7706835 Phaseolus vulgaris
Phvul.009G035100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 7701487-7703486 Phaseolus vulgaris
Phvul.009G035100 5.0kb upstream 5.0kb upstream 8349 true Chr09: 7703487-7711835 Phaseolus vulgaris
Phvul.009G035100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 7706836-7711835 Phaseolus vulgaris
Phvul.009G035100 5.0kb downstream 5.0kb downstream 8349 true Chr09: 7698487-7706835 Phaseolus vulgaris
Phvul.009G035100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 7698487-7703486 Phaseolus vulgaris
Phvul.009G035100 10.0kb upstream 10.0kb upstream 13349 true Chr09: 7703487-7716835 Phaseolus vulgaris
Phvul.009G035100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 7706836-7716835 Phaseolus vulgaris
Phvul.009G035100 10.0kb downstream 10.0kb downstream 13349 true Chr09: 7693487-7706835 Phaseolus vulgaris
Phvul.009G035100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 7693487-7703486 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300651 5265 Fabidae View MSA
124066836 5270 Rosid View MSA
123740201 5271 Pentapetalae View MSA
122793793 5272 Eudicot View MSA
122047581 5273 Angiosperm View MSA
121345702 5274 Embryophyte View MSA
123380258 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.0023 0.0 33.855    
cufflinks 13.3256 0.0 39.8152   High
cufflinks 9.46142 0.0 49.7794    
cufflinks 6.95782 0.0 32.2922   Low
cufflinks 7.92774 0.0 26.0427    
cufflinks 7.62101 0.0 24.8552   Low
cufflinks 8.10358 0.0 26.0489    
cufflinks 10.1914 0.0 31.4244    
cufflinks 8.53215 0.0 27.1075    
cufflinks 13.2549 0.0 39.795   High
cufflinks 10.2963 0.0 32.1774    

0 Strain