Gene : Phvul.006G135800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21297:SF2 - DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4 Genomic Order:  1357
Name:  ? Phvul.006G135800 Secondary Identifier:  ? PAC:37174200
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G135800 0.5kb upstream 0.5kb upstream 4205 true Chr06: 24351270-24355474 Phaseolus vulgaris
Phvul.006G135800 0.5kb upstream 0.5kb upstream 500 false Chr06: 24354975-24355474 Phaseolus vulgaris
Phvul.006G135800 0.5kb downstream 0.5kb downstream 4205 true Chr06: 24350770-24354974 Phaseolus vulgaris
Phvul.006G135800 0.5kb downstream 0.5kb downstream 500 false Chr06: 24350770-24351269 Phaseolus vulgaris
Phvul.006G135800 1.0kb upstream 1.0kb upstream 4705 true Chr06: 24351270-24355974 Phaseolus vulgaris
Phvul.006G135800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 24354975-24355974 Phaseolus vulgaris
Phvul.006G135800 1.0kb downstream 1.0kb downstream 4705 true Chr06: 24350270-24354974 Phaseolus vulgaris
Phvul.006G135800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 24350270-24351269 Phaseolus vulgaris
Phvul.006G135800 2.0kb upstream 2.0kb upstream 5705 true Chr06: 24351270-24356974 Phaseolus vulgaris
Phvul.006G135800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 24354975-24356974 Phaseolus vulgaris
Phvul.006G135800 2.0kb downstream 2.0kb downstream 5705 true Chr06: 24349270-24354974 Phaseolus vulgaris
Phvul.006G135800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 24349270-24351269 Phaseolus vulgaris
Phvul.006G135800 5.0kb upstream 5.0kb upstream 8705 true Chr06: 24351270-24359974 Phaseolus vulgaris
Phvul.006G135800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 24354975-24359974 Phaseolus vulgaris
Phvul.006G135800 5.0kb downstream 5.0kb downstream 8705 true Chr06: 24346270-24354974 Phaseolus vulgaris
Phvul.006G135800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 24346270-24351269 Phaseolus vulgaris
Phvul.006G135800 10.0kb upstream 10.0kb upstream 13705 true Chr06: 24351270-24364974 Phaseolus vulgaris
Phvul.006G135800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 24354975-24364974 Phaseolus vulgaris
Phvul.006G135800 10.0kb downstream 10.0kb downstream 13705 true Chr06: 24341270-24354974 Phaseolus vulgaris
Phvul.006G135800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 24341270-24351269 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299634 5265 Fabidae View MSA
124061465 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.2487 0.0 42.0039    
cufflinks 18.5311 0.0 50.1769   High
cufflinks 14.5411 0.0 40.1725    
cufflinks 13.9799 0.0 39.0344    
cufflinks 13.4386 0.0 37.7519    
cufflinks 10.3711 0.0 29.5649   Low
cufflinks 11.6541 0.0 32.8298    
cufflinks 17.6025 0.0 47.6727   High
cufflinks 10.1093 0.0 28.8738   Low
cufflinks 15.5596 0.0 42.821    
cufflinks 14.274 0.0 39.6848    

0 Strain