Gene : Phvul.006G137400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31573:SF1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2 Genomic Order:  1373
Name:  ? Phvul.006G137400 Secondary Identifier:  ? PAC:37172078
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G137400 0.5kb upstream 0.5kb upstream 2062 true Chr06: 24507338-24509399 Phaseolus vulgaris
Phvul.006G137400 0.5kb upstream 0.5kb upstream 500 false Chr06: 24508900-24509399 Phaseolus vulgaris
Phvul.006G137400 0.5kb downstream 0.5kb downstream 2062 true Chr06: 24506838-24508899 Phaseolus vulgaris
Phvul.006G137400 0.5kb downstream 0.5kb downstream 500 false Chr06: 24506838-24507337 Phaseolus vulgaris
Phvul.006G137400 1.0kb upstream 1.0kb upstream 2562 true Chr06: 24507338-24509899 Phaseolus vulgaris
Phvul.006G137400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 24508900-24509899 Phaseolus vulgaris
Phvul.006G137400 1.0kb downstream 1.0kb downstream 2562 true Chr06: 24506338-24508899 Phaseolus vulgaris
Phvul.006G137400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 24506338-24507337 Phaseolus vulgaris
Phvul.006G137400 2.0kb upstream 2.0kb upstream 3562 true Chr06: 24507338-24510899 Phaseolus vulgaris
Phvul.006G137400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 24508900-24510899 Phaseolus vulgaris
Phvul.006G137400 2.0kb downstream 2.0kb downstream 3562 true Chr06: 24505338-24508899 Phaseolus vulgaris
Phvul.006G137400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 24505338-24507337 Phaseolus vulgaris
Phvul.006G137400 5.0kb upstream 5.0kb upstream 6562 true Chr06: 24507338-24513899 Phaseolus vulgaris
Phvul.006G137400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 24508900-24513899 Phaseolus vulgaris
Phvul.006G137400 5.0kb downstream 5.0kb downstream 6562 true Chr06: 24502338-24508899 Phaseolus vulgaris
Phvul.006G137400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 24502338-24507337 Phaseolus vulgaris
Phvul.006G137400 10.0kb upstream 10.0kb upstream 11562 true Chr06: 24507338-24518899 Phaseolus vulgaris
Phvul.006G137400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 24508900-24518899 Phaseolus vulgaris
Phvul.006G137400 10.0kb downstream 10.0kb downstream 11562 true Chr06: 24497338-24508899 Phaseolus vulgaris
Phvul.006G137400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 24497338-24507337 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306751 5265 Fabidae View MSA
124050829 5270 Rosid View MSA
123749996 5271 Pentapetalae View MSA
122791674 5272 Eudicot View MSA
122048951 5273 Angiosperm View MSA
121351428 5274 Embryophyte View MSA
123423770 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.03738 0.0 3.92474    
cufflinks 1.31005 0.0 4.86407    
cufflinks 1.12475 0.0 4.23101    
cufflinks 1.29207 0.0 4.82254    
cufflinks 1.17452 0.0 4.41532    
cufflinks 1.52622 0.0 5.59605    
cufflinks 0.896622 0.0 3.44022    
cufflinks 1.44896 0.0 5.32543    
cufflinks 1.43413 0.0 5.3002    
cufflinks 0.57482 0.0 2.27772   Low
cufflinks 1.30845 0.0 4.86971    

0 Strain