Gene : Phvul.009G152000 P. vulgaris v2.1
Defline:  (1 of 1) KOG3487 - TRAPP 20 K subunit Genomic Order:  1561
Name:  ? Phvul.009G152000 Secondary Identifier:  ? PAC:37152165
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G152000 0.5kb upstream 0.5kb upstream 3807 true Chr09: 22590976-22594782 Phaseolus vulgaris
Phvul.009G152000 0.5kb upstream 0.5kb upstream 500 false Chr09: 22590976-22591475 Phaseolus vulgaris
Phvul.009G152000 0.5kb downstream 0.5kb downstream 3807 true Chr09: 22591476-22595282 Phaseolus vulgaris
Phvul.009G152000 0.5kb downstream 0.5kb downstream 500 false Chr09: 22594783-22595282 Phaseolus vulgaris
Phvul.009G152000 1.0kb upstream 1.0kb upstream 4307 true Chr09: 22590476-22594782 Phaseolus vulgaris
Phvul.009G152000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 22590476-22591475 Phaseolus vulgaris
Phvul.009G152000 1.0kb downstream 1.0kb downstream 4307 true Chr09: 22591476-22595782 Phaseolus vulgaris
Phvul.009G152000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 22594783-22595782 Phaseolus vulgaris
Phvul.009G152000 2.0kb upstream 2.0kb upstream 5307 true Chr09: 22589476-22594782 Phaseolus vulgaris
Phvul.009G152000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 22589476-22591475 Phaseolus vulgaris
Phvul.009G152000 2.0kb downstream 2.0kb downstream 5307 true Chr09: 22591476-22596782 Phaseolus vulgaris
Phvul.009G152000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 22594783-22596782 Phaseolus vulgaris
Phvul.009G152000 5.0kb upstream 5.0kb upstream 8307 true Chr09: 22586476-22594782 Phaseolus vulgaris
Phvul.009G152000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 22586476-22591475 Phaseolus vulgaris
Phvul.009G152000 5.0kb downstream 5.0kb downstream 8307 true Chr09: 22591476-22599782 Phaseolus vulgaris
Phvul.009G152000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 22594783-22599782 Phaseolus vulgaris
Phvul.009G152000 10.0kb upstream 10.0kb upstream 13307 true Chr09: 22581476-22594782 Phaseolus vulgaris
Phvul.009G152000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 22581476-22591475 Phaseolus vulgaris
Phvul.009G152000 10.0kb downstream 10.0kb downstream 13307 true Chr09: 22591476-22604782 Phaseolus vulgaris
Phvul.009G152000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 22594783-22604782 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313980 5265 Fabidae View MSA
124060844 5270 Rosid View MSA
123746210 5271 Pentapetalae View MSA
122790146 5272 Eudicot View MSA
122049402 5273 Angiosperm View MSA
123429051 5275 Viridiplantae View MSA
121344946 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.2317 0.0 70.7118   High
cufflinks 13.1159 0.0 37.9267   Low
cufflinks 23.5016 0.0 64.1615    
cufflinks 26.3 0.0 71.2076   High
cufflinks 19.7777 0.0 55.0192    
cufflinks 15.9832 0.0 45.2491    
cufflinks 16.1196 0.0 45.8076    
cufflinks 16.7388 0.0 47.2818    
cufflinks 21.665 0.0 60.0769    
cufflinks 13.3692 0.0 38.5579   Low
cufflinks 17.4444 0.0 49.2472    

0 Strain