Gene : Phvul.009G137600 P. vulgaris v2.1
Defline:  (1 of 3) K03093 - RNA polymerase sigma factor (SIGMA70) Genomic Order:  1417
Name:  ? Phvul.009G137600 Secondary Identifier:  ? PAC:37150377
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G137600 0.5kb upstream 0.5kb upstream 3910 true Chr09: 20738607-20742516 Phaseolus vulgaris
Phvul.009G137600 0.5kb upstream 0.5kb upstream 500 false Chr09: 20738607-20739106 Phaseolus vulgaris
Phvul.009G137600 0.5kb downstream 0.5kb downstream 3910 true Chr09: 20739107-20743016 Phaseolus vulgaris
Phvul.009G137600 0.5kb downstream 0.5kb downstream 500 false Chr09: 20742517-20743016 Phaseolus vulgaris
Phvul.009G137600 1.0kb upstream 1.0kb upstream 4410 true Chr09: 20738107-20742516 Phaseolus vulgaris
Phvul.009G137600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 20738107-20739106 Phaseolus vulgaris
Phvul.009G137600 1.0kb downstream 1.0kb downstream 4410 true Chr09: 20739107-20743516 Phaseolus vulgaris
Phvul.009G137600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 20742517-20743516 Phaseolus vulgaris
Phvul.009G137600 2.0kb upstream 2.0kb upstream 5410 true Chr09: 20737107-20742516 Phaseolus vulgaris
Phvul.009G137600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 20737107-20739106 Phaseolus vulgaris
Phvul.009G137600 2.0kb downstream 2.0kb downstream 5410 true Chr09: 20739107-20744516 Phaseolus vulgaris
Phvul.009G137600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 20742517-20744516 Phaseolus vulgaris
Phvul.009G137600 5.0kb upstream 5.0kb upstream 8410 true Chr09: 20734107-20742516 Phaseolus vulgaris
Phvul.009G137600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 20734107-20739106 Phaseolus vulgaris
Phvul.009G137600 5.0kb downstream 5.0kb downstream 8410 true Chr09: 20739107-20747516 Phaseolus vulgaris
Phvul.009G137600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 20742517-20747516 Phaseolus vulgaris
Phvul.009G137600 10.0kb upstream 10.0kb upstream 13410 true Chr09: 20729107-20742516 Phaseolus vulgaris
Phvul.009G137600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 20729107-20739106 Phaseolus vulgaris
Phvul.009G137600 10.0kb downstream 10.0kb downstream 13410 true Chr09: 20739107-20752516 Phaseolus vulgaris
Phvul.009G137600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 20742517-20752516 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026363 5273 Angiosperm View MSA
122311905 5265 Fabidae View MSA
124065012 5270 Rosid View MSA
123740689 5271 Pentapetalae View MSA
122788659 5272 Eudicot View MSA
121349199 5274 Embryophyte View MSA
123381214 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.94987 0.0 11.5187    
cufflinks 3.37974 0.0 10.0831    
cufflinks 4.91027 0.0 14.017    
cufflinks 2.59177 0.0 8.04689    
cufflinks 1.20829 0.0 4.09334    
cufflinks 5.25101 0.0 14.9223   High
cufflinks 0.418964 0.0 1.55934 Low Low
cufflinks 0.606937 0.0 2.17645   Low
cufflinks 0.395432 0.0 1.48142 Low Low
cufflinks 3.05728 0.0 9.24431    
cufflinks 3.76225 0.0 11.1531    

0 Strain