Gene : Phvul.009G132600 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1364
Name:  ? Phvul.009G132600 Secondary Identifier:  ? PAC:37152015
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G132600 0.5kb upstream 0.5kb upstream 3152 true Chr09: 20053595-20056746 Phaseolus vulgaris
Phvul.009G132600 0.5kb upstream 0.5kb upstream 500 false Chr09: 20053595-20054094 Phaseolus vulgaris
Phvul.009G132600 0.5kb downstream 0.5kb downstream 3152 true Chr09: 20054095-20057246 Phaseolus vulgaris
Phvul.009G132600 0.5kb downstream 0.5kb downstream 500 false Chr09: 20056747-20057246 Phaseolus vulgaris
Phvul.009G132600 1.0kb upstream 1.0kb upstream 3652 true Chr09: 20053095-20056746 Phaseolus vulgaris
Phvul.009G132600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 20053095-20054094 Phaseolus vulgaris
Phvul.009G132600 1.0kb downstream 1.0kb downstream 3652 true Chr09: 20054095-20057746 Phaseolus vulgaris
Phvul.009G132600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 20056747-20057746 Phaseolus vulgaris
Phvul.009G132600 2.0kb upstream 2.0kb upstream 4652 true Chr09: 20052095-20056746 Phaseolus vulgaris
Phvul.009G132600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 20052095-20054094 Phaseolus vulgaris
Phvul.009G132600 2.0kb downstream 2.0kb downstream 4652 true Chr09: 20054095-20058746 Phaseolus vulgaris
Phvul.009G132600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 20056747-20058746 Phaseolus vulgaris
Phvul.009G132600 5.0kb upstream 5.0kb upstream 7652 true Chr09: 20049095-20056746 Phaseolus vulgaris
Phvul.009G132600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 20049095-20054094 Phaseolus vulgaris
Phvul.009G132600 5.0kb downstream 5.0kb downstream 7652 true Chr09: 20054095-20061746 Phaseolus vulgaris
Phvul.009G132600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 20056747-20061746 Phaseolus vulgaris
Phvul.009G132600 10.0kb upstream 10.0kb upstream 12652 true Chr09: 20044095-20056746 Phaseolus vulgaris
Phvul.009G132600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 20044095-20054094 Phaseolus vulgaris
Phvul.009G132600 10.0kb downstream 10.0kb downstream 12652 true Chr09: 20054095-20066746 Phaseolus vulgaris
Phvul.009G132600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 20056747-20066746 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299420 5265 Fabidae View MSA
124061594 5270 Rosid View MSA
123740286 5271 Pentapetalae View MSA
122790311 5272 Eudicot View MSA
122046629 5273 Angiosperm View MSA
121310635 5274 Embryophyte View MSA
123348067 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.278143 0.0 1.0405 Low  
cufflinks 0.580929 0.0 2.03595   High
cufflinks 0.153652 0.0 0.602581 Low Low
cufflinks 0.303864 0.0 1.1369 Low  
cufflinks 0.550654 0.0 1.94633 Low  
cufflinks 0.216342 0.0 0.827536 Low Low
cufflinks 0.29373 0.0 1.09771 Low  
cufflinks 0.687287 0.0 2.36168   High
cufflinks 0.373342 0.0 1.36982 Low  
cufflinks 0.600985 0.0 2.09709   High
cufflinks 0.332688 0.0 1.23218 Low  

0 Strain