Gene : Phvul.009G135100 P. vulgaris v2.1
Defline:  (1 of 1) K12479 - vacuolar protein sorting-associated protein 45 (VPS45) Genomic Order:  1391
Name:  ? Phvul.009G135100 Secondary Identifier:  ? PAC:37148811
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G135100 0.5kb upstream 0.5kb upstream 8423 true Chr09: 20400154-20408576 Phaseolus vulgaris
Phvul.009G135100 0.5kb upstream 0.5kb upstream 500 false Chr09: 20400154-20400653 Phaseolus vulgaris
Phvul.009G135100 0.5kb downstream 0.5kb downstream 8423 true Chr09: 20400654-20409076 Phaseolus vulgaris
Phvul.009G135100 0.5kb downstream 0.5kb downstream 500 false Chr09: 20408577-20409076 Phaseolus vulgaris
Phvul.009G135100 1.0kb upstream 1.0kb upstream 8923 true Chr09: 20399654-20408576 Phaseolus vulgaris
Phvul.009G135100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 20399654-20400653 Phaseolus vulgaris
Phvul.009G135100 1.0kb downstream 1.0kb downstream 8923 true Chr09: 20400654-20409576 Phaseolus vulgaris
Phvul.009G135100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 20408577-20409576 Phaseolus vulgaris
Phvul.009G135100 2.0kb upstream 2.0kb upstream 9923 true Chr09: 20398654-20408576 Phaseolus vulgaris
Phvul.009G135100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 20398654-20400653 Phaseolus vulgaris
Phvul.009G135100 2.0kb downstream 2.0kb downstream 9923 true Chr09: 20400654-20410576 Phaseolus vulgaris
Phvul.009G135100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 20408577-20410576 Phaseolus vulgaris
Phvul.009G135100 5.0kb upstream 5.0kb upstream 12923 true Chr09: 20395654-20408576 Phaseolus vulgaris
Phvul.009G135100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 20395654-20400653 Phaseolus vulgaris
Phvul.009G135100 5.0kb downstream 5.0kb downstream 12923 true Chr09: 20400654-20413576 Phaseolus vulgaris
Phvul.009G135100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 20408577-20413576 Phaseolus vulgaris
Phvul.009G135100 10.0kb upstream 10.0kb upstream 17923 true Chr09: 20390654-20408576 Phaseolus vulgaris
Phvul.009G135100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 20390654-20400653 Phaseolus vulgaris
Phvul.009G135100 10.0kb downstream 10.0kb downstream 17923 true Chr09: 20400654-20418576 Phaseolus vulgaris
Phvul.009G135100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 20408577-20418576 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308424 5265 Fabidae View MSA
124069104 5270 Rosid View MSA
123737015 5271 Pentapetalae View MSA
122795036 5272 Eudicot View MSA
122044775 5273 Angiosperm View MSA
121347331 5274 Embryophyte View MSA
123424934 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.8848 0.0 11.0196   Low
cufflinks 4.56835 0.0 12.782    
cufflinks 6.54082 0.0 17.7035    
cufflinks 4.06858 0.0 11.5748   Low
cufflinks 5.57075 0.0 15.4012    
cufflinks 6.24385 0.0 16.9908    
cufflinks 6.6376 0.0 17.9539    
cufflinks 6.46972 0.0 17.4909    
cufflinks 7.89113 0.0 21.1158   High
cufflinks 7.53411 0.0 20.2147   High
cufflinks 5.43312 0.0 15.0381    

0 Strain