Gene : Phvul.009G124400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23354:SF75 - LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 Genomic Order:  1282
Name:  ? Phvul.009G124400 Secondary Identifier:  ? PAC:37148619
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G124400 0.5kb upstream 0.5kb upstream 3006 true Chr09: 19016290-19019295 Phaseolus vulgaris
Phvul.009G124400 0.5kb upstream 0.5kb upstream 500 false Chr09: 19018796-19019295 Phaseolus vulgaris
Phvul.009G124400 0.5kb downstream 0.5kb downstream 3006 true Chr09: 19015790-19018795 Phaseolus vulgaris
Phvul.009G124400 0.5kb downstream 0.5kb downstream 500 false Chr09: 19015790-19016289 Phaseolus vulgaris
Phvul.009G124400 1.0kb upstream 1.0kb upstream 3506 true Chr09: 19016290-19019795 Phaseolus vulgaris
Phvul.009G124400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 19018796-19019795 Phaseolus vulgaris
Phvul.009G124400 1.0kb downstream 1.0kb downstream 3506 true Chr09: 19015290-19018795 Phaseolus vulgaris
Phvul.009G124400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 19015290-19016289 Phaseolus vulgaris
Phvul.009G124400 2.0kb upstream 2.0kb upstream 4506 true Chr09: 19016290-19020795 Phaseolus vulgaris
Phvul.009G124400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 19018796-19020795 Phaseolus vulgaris
Phvul.009G124400 2.0kb downstream 2.0kb downstream 4506 true Chr09: 19014290-19018795 Phaseolus vulgaris
Phvul.009G124400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 19014290-19016289 Phaseolus vulgaris
Phvul.009G124400 5.0kb upstream 5.0kb upstream 7506 true Chr09: 19016290-19023795 Phaseolus vulgaris
Phvul.009G124400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 19018796-19023795 Phaseolus vulgaris
Phvul.009G124400 5.0kb downstream 5.0kb downstream 7506 true Chr09: 19011290-19018795 Phaseolus vulgaris
Phvul.009G124400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 19011290-19016289 Phaseolus vulgaris
Phvul.009G124400 10.0kb upstream 10.0kb upstream 12506 true Chr09: 19016290-19028795 Phaseolus vulgaris
Phvul.009G124400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 19018796-19028795 Phaseolus vulgaris
Phvul.009G124400 10.0kb downstream 10.0kb downstream 12506 true Chr09: 19006290-19018795 Phaseolus vulgaris
Phvul.009G124400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 19006290-19016289 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300621 5265 Fabidae View MSA
124060398 5270 Rosid View MSA
123740598 5271 Pentapetalae View MSA
122791111 5272 Eudicot View MSA
122046889 5273 Angiosperm View MSA
121350976 5274 Embryophyte View MSA
123381953 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.7865 0.0 39.3756    
cufflinks 64.0425 0.0 168.778 High  
cufflinks 21.7278 0.0 56.6578    
cufflinks 21.1449 0.0 54.9064    
cufflinks 55.5171 0.0 145.856 High  
cufflinks 39.912 0.0 103.299 High  
cufflinks 41.2323 0.0 106.876 High  
cufflinks 56.5881 0.0 147.981 High  
cufflinks 35.9014 0.0 92.8387 High  
cufflinks 4.21206 0.0 12.6592   Low
cufflinks 66.1377 0.0 174.977 High  

0 Strain