Gene : Phvul.006G221500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31384:SF28 - AUXIN RESPONSE FACTOR 1 Genomic Order:  2233
Name:  ? Phvul.006G221500 Secondary Identifier:  ? PAC:37174101
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G221500 0.5kb upstream 0.5kb upstream 6441 true Chr06: 31176865-31183305 Phaseolus vulgaris
Phvul.006G221500 0.5kb upstream 0.5kb upstream 500 false Chr06: 31182806-31183305 Phaseolus vulgaris
Phvul.006G221500 0.5kb downstream 0.5kb downstream 6441 true Chr06: 31176365-31182805 Phaseolus vulgaris
Phvul.006G221500 0.5kb downstream 0.5kb downstream 500 false Chr06: 31176365-31176864 Phaseolus vulgaris
Phvul.006G221500 1.0kb upstream 1.0kb upstream 6941 true Chr06: 31176865-31183805 Phaseolus vulgaris
Phvul.006G221500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 31182806-31183805 Phaseolus vulgaris
Phvul.006G221500 1.0kb downstream 1.0kb downstream 6941 true Chr06: 31175865-31182805 Phaseolus vulgaris
Phvul.006G221500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 31175865-31176864 Phaseolus vulgaris
Phvul.006G221500 2.0kb upstream 2.0kb upstream 7941 true Chr06: 31176865-31184805 Phaseolus vulgaris
Phvul.006G221500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 31182806-31184805 Phaseolus vulgaris
Phvul.006G221500 2.0kb downstream 2.0kb downstream 7941 true Chr06: 31174865-31182805 Phaseolus vulgaris
Phvul.006G221500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 31174865-31176864 Phaseolus vulgaris
Phvul.006G221500 5.0kb upstream 5.0kb upstream 10941 true Chr06: 31176865-31187805 Phaseolus vulgaris
Phvul.006G221500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 31182806-31187805 Phaseolus vulgaris
Phvul.006G221500 5.0kb downstream 5.0kb downstream 10941 true Chr06: 31171865-31182805 Phaseolus vulgaris
Phvul.006G221500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 31171865-31176864 Phaseolus vulgaris
Phvul.006G221500 10.0kb upstream 10.0kb upstream 15941 true Chr06: 31176865-31192805 Phaseolus vulgaris
Phvul.006G221500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 31182806-31192805 Phaseolus vulgaris
Phvul.006G221500 10.0kb downstream 10.0kb downstream 15941 true Chr06: 31166865-31182805 Phaseolus vulgaris
Phvul.006G221500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 31166865-31176864 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300985 5265 Fabidae View MSA
124069092 5270 Rosid View MSA
123739292 5271 Pentapetalae View MSA
122788624 5272 Eudicot View MSA
122050868 5273 Angiosperm View MSA
121348224 5274 Embryophyte View MSA
123380779 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.0905 0.0 26.2781   Low
cufflinks 14.6781 0.0 37.9413    
cufflinks 19.5995 0.0 50.839   High
cufflinks 11.2556 0.0 29.2624   Low
cufflinks 15.2106 0.0 39.3202    
cufflinks 14.3015 0.0 36.9699    
cufflinks 15.9841 0.0 41.3258    
cufflinks 14.8309 0.0 38.3358    
cufflinks 15.6581 0.0 40.4754    
cufflinks 21.2277 0.0 55.145   High
cufflinks 15.6535 0.0 40.4613    

0 Strain