Gene : Phvul.006G220300 P. vulgaris v2.1
Defline:  (1 of 4) K07874 - Ras-related protein Rab-1A (RAB1A) Genomic Order:  2221
Name:  ? Phvul.006G220300 Secondary Identifier:  ? PAC:37171670
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G220300 0.5kb upstream 0.5kb upstream 2941 true Chr06: 31122735-31125675 Phaseolus vulgaris
Phvul.006G220300 0.5kb upstream 0.5kb upstream 500 false Chr06: 31125176-31125675 Phaseolus vulgaris
Phvul.006G220300 0.5kb downstream 0.5kb downstream 2941 true Chr06: 31122235-31125175 Phaseolus vulgaris
Phvul.006G220300 0.5kb downstream 0.5kb downstream 500 false Chr06: 31122235-31122734 Phaseolus vulgaris
Phvul.006G220300 1.0kb upstream 1.0kb upstream 3441 true Chr06: 31122735-31126175 Phaseolus vulgaris
Phvul.006G220300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 31125176-31126175 Phaseolus vulgaris
Phvul.006G220300 1.0kb downstream 1.0kb downstream 3441 true Chr06: 31121735-31125175 Phaseolus vulgaris
Phvul.006G220300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 31121735-31122734 Phaseolus vulgaris
Phvul.006G220300 2.0kb upstream 2.0kb upstream 4441 true Chr06: 31122735-31127175 Phaseolus vulgaris
Phvul.006G220300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 31125176-31127175 Phaseolus vulgaris
Phvul.006G220300 2.0kb downstream 2.0kb downstream 4441 true Chr06: 31120735-31125175 Phaseolus vulgaris
Phvul.006G220300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 31120735-31122734 Phaseolus vulgaris
Phvul.006G220300 5.0kb upstream 5.0kb upstream 7441 true Chr06: 31122735-31130175 Phaseolus vulgaris
Phvul.006G220300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 31125176-31130175 Phaseolus vulgaris
Phvul.006G220300 5.0kb downstream 5.0kb downstream 7441 true Chr06: 31117735-31125175 Phaseolus vulgaris
Phvul.006G220300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 31117735-31122734 Phaseolus vulgaris
Phvul.006G220300 10.0kb upstream 10.0kb upstream 12441 true Chr06: 31122735-31135175 Phaseolus vulgaris
Phvul.006G220300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 31125176-31135175 Phaseolus vulgaris
Phvul.006G220300 10.0kb downstream 10.0kb downstream 12441 true Chr06: 31112735-31125175 Phaseolus vulgaris
Phvul.006G220300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 31112735-31122734 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307543 5265 Fabidae View MSA
124069076 5270 Rosid View MSA
123751824 5271 Pentapetalae View MSA
122790166 5272 Eudicot View MSA
122051400 5273 Angiosperm View MSA
121350724 5274 Embryophyte View MSA
123381858 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.6553 0.0 61.2125   High
cufflinks 18.7594 0.0 53.868    
cufflinks 15.5795 0.0 45.6628    
cufflinks 18.2756 0.0 52.8506    
cufflinks 17.0089 0.0 49.7903    
cufflinks 17.3167 0.0 50.1558    
cufflinks 15.8994 0.0 46.4909    
cufflinks 20.0105 0.0 57.1185    
cufflinks 12.5032 0.0 37.5799   Low
cufflinks 12.2831 0.0 37.1267   Low
cufflinks 22.9829 0.0 65.0419   High

0 Strain