Gene : Phvul.009G116900 P. vulgaris v2.1
Defline:  (1 of 3) K01872 - alanyl-tRNA synthetase (AARS, alaS) Genomic Order:  1204
Name:  ? Phvul.009G116900 Secondary Identifier:  ? PAC:37150411
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G116900 0.5kb upstream 0.5kb upstream 6597 true Chr09: 18025630-18032226 Phaseolus vulgaris
Phvul.009G116900 0.5kb upstream 0.5kb upstream 500 false Chr09: 18031727-18032226 Phaseolus vulgaris
Phvul.009G116900 0.5kb downstream 0.5kb downstream 6597 true Chr09: 18025130-18031726 Phaseolus vulgaris
Phvul.009G116900 0.5kb downstream 0.5kb downstream 500 false Chr09: 18025130-18025629 Phaseolus vulgaris
Phvul.009G116900 1.0kb upstream 1.0kb upstream 7097 true Chr09: 18025630-18032726 Phaseolus vulgaris
Phvul.009G116900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 18031727-18032726 Phaseolus vulgaris
Phvul.009G116900 1.0kb downstream 1.0kb downstream 7097 true Chr09: 18024630-18031726 Phaseolus vulgaris
Phvul.009G116900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 18024630-18025629 Phaseolus vulgaris
Phvul.009G116900 2.0kb upstream 2.0kb upstream 8097 true Chr09: 18025630-18033726 Phaseolus vulgaris
Phvul.009G116900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 18031727-18033726 Phaseolus vulgaris
Phvul.009G116900 2.0kb downstream 2.0kb downstream 8097 true Chr09: 18023630-18031726 Phaseolus vulgaris
Phvul.009G116900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 18023630-18025629 Phaseolus vulgaris
Phvul.009G116900 5.0kb upstream 5.0kb upstream 11097 true Chr09: 18025630-18036726 Phaseolus vulgaris
Phvul.009G116900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 18031727-18036726 Phaseolus vulgaris
Phvul.009G116900 5.0kb downstream 5.0kb downstream 11097 true Chr09: 18020630-18031726 Phaseolus vulgaris
Phvul.009G116900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 18020630-18025629 Phaseolus vulgaris
Phvul.009G116900 10.0kb upstream 10.0kb upstream 16097 true Chr09: 18025630-18041726 Phaseolus vulgaris
Phvul.009G116900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 18031727-18041726 Phaseolus vulgaris
Phvul.009G116900 10.0kb downstream 10.0kb downstream 16097 true Chr09: 18015630-18031726 Phaseolus vulgaris
Phvul.009G116900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 18015630-18025629 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309054 5265 Fabidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.22812 0.0 11.4193    
cufflinks 7.24007 0.0 18.8892    
cufflinks 68.1579 0.0 202.33 High High
cufflinks 3.24414 0.0 9.04658    
cufflinks 4.16283 0.0 11.3489    
cufflinks 38.0577 0.0 105.156 High High
cufflinks 1.27387 0.0 3.87972   Low
cufflinks 1.96157 0.0 5.66121    
cufflinks 1.23633 0.0 3.787   Low
cufflinks 8.98626 0.0 23.2944    
cufflinks 3.81907 0.0 10.4562    

0 Strain