Gene : Phvul.009G139500 P. vulgaris v2.1

Defline:  (1 of 1) PTHR32438:SF5 - 4-ALPHA-GLUCANOTRANSFERASE DPE1, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  1437
Name:  ? Phvul.009G139500 Secondary Identifier:  ? PAC:37151577

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6724 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7238 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G139500 0.5kb upstream 0.5kb upstream 5851 true Chr09: 21053627-21059477 Phaseolus vulgaris
Phvul.009G139500 0.5kb upstream 0.5kb upstream 500 false Chr09: 21058978-21059477 Phaseolus vulgaris
Phvul.009G139500 0.5kb downstream 0.5kb downstream 5851 true Chr09: 21053127-21058977 Phaseolus vulgaris
Phvul.009G139500 0.5kb downstream 0.5kb downstream 500 false Chr09: 21053127-21053626 Phaseolus vulgaris
Phvul.009G139500 1.0kb upstream 1.0kb upstream 6351 true Chr09: 21053627-21059977 Phaseolus vulgaris
Phvul.009G139500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 21058978-21059977 Phaseolus vulgaris
Phvul.009G139500 1.0kb downstream 1.0kb downstream 6351 true Chr09: 21052627-21058977 Phaseolus vulgaris
Phvul.009G139500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 21052627-21053626 Phaseolus vulgaris
Phvul.009G139500 2.0kb upstream 2.0kb upstream 7351 true Chr09: 21053627-21060977 Phaseolus vulgaris
Phvul.009G139500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 21058978-21060977 Phaseolus vulgaris
Phvul.009G139500 2.0kb downstream 2.0kb downstream 7351 true Chr09: 21051627-21058977 Phaseolus vulgaris
Phvul.009G139500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 21051627-21053626 Phaseolus vulgaris
Phvul.009G139500 5.0kb upstream 5.0kb upstream 10351 true Chr09: 21053627-21063977 Phaseolus vulgaris
Phvul.009G139500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 21058978-21063977 Phaseolus vulgaris
Phvul.009G139500 5.0kb downstream 5.0kb downstream 10351 true Chr09: 21048627-21058977 Phaseolus vulgaris
Phvul.009G139500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 21048627-21053626 Phaseolus vulgaris
Phvul.009G139500 10.0kb upstream 10.0kb upstream 15351 true Chr09: 21053627-21068977 Phaseolus vulgaris
Phvul.009G139500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 21058978-21068977 Phaseolus vulgaris
Phvul.009G139500 10.0kb downstream 10.0kb downstream 15351 true Chr09: 21043627-21058977 Phaseolus vulgaris
Phvul.009G139500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 21043627-21053626 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308920 5265 Fabidae View MSA
124069427 5270 Rosid View MSA
123741915 5271 Pentapetalae View MSA
122794283 5272 Eudicot View MSA
122048475 5273 Angiosperm View MSA
121348239 5274 Embryophyte View MSA
123427426 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.00494 0.0 16.3968   Low
cufflinks 16.8462 0.0 46.9636    
cufflinks 27.3744 0.0 76.8222   High
cufflinks 13.7636 0.0 39.0288    
cufflinks 15.0914 0.0 42.5425    
cufflinks 31.4874 0.0 89.0047   High
cufflinks 6.42793 0.0 20.0813   Low
cufflinks 10.9038 0.0 31.3759    
cufflinks 6.30095 0.0 19.8432   Low
cufflinks 7.93897 0.0 24.2092    
cufflinks 20.1515 0.0 56.0268    

0 Strain