Gene : Phvul.006G205000 P. vulgaris v2.1
Defline:  (1 of 1) K15336 - tRNA (cytosine38-C5)-methyltransferase [EC:2.1.1.204] (TRDMT1, DNMT2) Genomic Order:  2064
Name:  ? Phvul.006G205000 Secondary Identifier:  ? PAC:37174162
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G205000 0.5kb upstream 0.5kb upstream 4731 true Chr06: 30015738-30020468 Phaseolus vulgaris
Phvul.006G205000 0.5kb upstream 0.5kb upstream 500 false Chr06: 30019969-30020468 Phaseolus vulgaris
Phvul.006G205000 0.5kb downstream 0.5kb downstream 4731 true Chr06: 30015238-30019968 Phaseolus vulgaris
Phvul.006G205000 0.5kb downstream 0.5kb downstream 500 false Chr06: 30015238-30015737 Phaseolus vulgaris
Phvul.006G205000 1.0kb upstream 1.0kb upstream 5231 true Chr06: 30015738-30020968 Phaseolus vulgaris
Phvul.006G205000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 30019969-30020968 Phaseolus vulgaris
Phvul.006G205000 1.0kb downstream 1.0kb downstream 5231 true Chr06: 30014738-30019968 Phaseolus vulgaris
Phvul.006G205000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 30014738-30015737 Phaseolus vulgaris
Phvul.006G205000 2.0kb upstream 2.0kb upstream 6231 true Chr06: 30015738-30021968 Phaseolus vulgaris
Phvul.006G205000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 30019969-30021968 Phaseolus vulgaris
Phvul.006G205000 2.0kb downstream 2.0kb downstream 6231 true Chr06: 30013738-30019968 Phaseolus vulgaris
Phvul.006G205000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 30013738-30015737 Phaseolus vulgaris
Phvul.006G205000 5.0kb upstream 5.0kb upstream 9231 true Chr06: 30015738-30024968 Phaseolus vulgaris
Phvul.006G205000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 30019969-30024968 Phaseolus vulgaris
Phvul.006G205000 5.0kb downstream 5.0kb downstream 9231 true Chr06: 30010738-30019968 Phaseolus vulgaris
Phvul.006G205000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 30010738-30015737 Phaseolus vulgaris
Phvul.006G205000 10.0kb upstream 10.0kb upstream 14231 true Chr06: 30015738-30029968 Phaseolus vulgaris
Phvul.006G205000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 30019969-30029968 Phaseolus vulgaris
Phvul.006G205000 10.0kb downstream 10.0kb downstream 14231 true Chr06: 30005738-30019968 Phaseolus vulgaris
Phvul.006G205000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 30005738-30015737 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299977 5265 Fabidae View MSA
124060952 5270 Rosid View MSA
123740038 5271 Pentapetalae View MSA
122790174 5272 Eudicot View MSA
122042989 5273 Angiosperm View MSA
121345070 5274 Embryophyte View MSA
123423972 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.71221 0.0 11.5941   Low
cufflinks 3.42376 0.0 14.2603    
cufflinks 4.07532 0.0 16.2152    
cufflinks 2.73785 0.0 12.3003    
cufflinks 3.35147 0.0 13.8166    
cufflinks 3.35754 0.0 13.6372    
cufflinks 4.13699 0.0 16.1104    
cufflinks 5.03793 0.0 18.2822   High
cufflinks 3.74923 0.0 15.3015    
cufflinks 2.5636 0.0 11.161   Low
cufflinks 2.7926 0.0 12.1598    

0 Strain