Gene : Phvul.009G169400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12741:SF5 - CALLOSE SYNTHASE 10 Genomic Order:  1735
Name:  ? Phvul.009G169400 Secondary Identifier:  ? PAC:37148890
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6773 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G169400 0.5kb upstream 0.5kb upstream 59775 true Chr09: 25192105-25251879 Phaseolus vulgaris
Phvul.009G169400 0.5kb upstream 0.5kb upstream 500 false Chr09: 25192105-25192604 Phaseolus vulgaris
Phvul.009G169400 0.5kb downstream 0.5kb downstream 59775 true Chr09: 25192605-25252379 Phaseolus vulgaris
Phvul.009G169400 0.5kb downstream 0.5kb downstream 500 false Chr09: 25251880-25252379 Phaseolus vulgaris
Phvul.009G169400 1.0kb upstream 1.0kb upstream 60275 true Chr09: 25191605-25251879 Phaseolus vulgaris
Phvul.009G169400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 25191605-25192604 Phaseolus vulgaris
Phvul.009G169400 1.0kb downstream 1.0kb downstream 60275 true Chr09: 25192605-25252879 Phaseolus vulgaris
Phvul.009G169400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 25251880-25252879 Phaseolus vulgaris
Phvul.009G169400 2.0kb upstream 2.0kb upstream 61275 true Chr09: 25190605-25251879 Phaseolus vulgaris
Phvul.009G169400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 25190605-25192604 Phaseolus vulgaris
Phvul.009G169400 2.0kb downstream 2.0kb downstream 61275 true Chr09: 25192605-25253879 Phaseolus vulgaris
Phvul.009G169400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 25251880-25253879 Phaseolus vulgaris
Phvul.009G169400 5.0kb upstream 5.0kb upstream 64275 true Chr09: 25187605-25251879 Phaseolus vulgaris
Phvul.009G169400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 25187605-25192604 Phaseolus vulgaris
Phvul.009G169400 5.0kb downstream 5.0kb downstream 64275 true Chr09: 25192605-25256879 Phaseolus vulgaris
Phvul.009G169400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 25251880-25256879 Phaseolus vulgaris
Phvul.009G169400 10.0kb upstream 10.0kb upstream 69275 true Chr09: 25182605-25251879 Phaseolus vulgaris
Phvul.009G169400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 25182605-25192604 Phaseolus vulgaris
Phvul.009G169400 10.0kb downstream 10.0kb downstream 69275 true Chr09: 25192605-25261879 Phaseolus vulgaris
Phvul.009G169400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 25251880-25261879 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313418 5265 Fabidae View MSA
124064291 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.75962 0.0 11.6784   Low
cufflinks 12.3325 0.0 46.587    
cufflinks 15.4841 0.0 63.0857    
cufflinks 5.47939 0.0 21.6908   Low
cufflinks 12.4291 0.0 41.8258    
cufflinks 18.0684 0.0 67.6072    
cufflinks 16.1836 0.0 68.6839    
cufflinks 20.8159 0.0 89.0578    
cufflinks 16.7945 0.0 69.2773    
cufflinks 23.3742 0.0 92.1074   High
cufflinks 10.5464 0.0 40.1545    

0 Strain