Gene : Phvul.009G162200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13468:SF6 - DEK DOMAIN-CONTAINING CHROMATIN ASSOCIATED PROTEIN Genomic Order:  1663
Name:  ? Phvul.009G162200 Secondary Identifier:  ? PAC:37149355
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G162200 0.5kb upstream 0.5kb upstream 7151 true Chr09: 24092014-24099164 Phaseolus vulgaris
Phvul.009G162200 0.5kb upstream 0.5kb upstream 500 false Chr09: 24092014-24092513 Phaseolus vulgaris
Phvul.009G162200 0.5kb downstream 0.5kb downstream 7151 true Chr09: 24092514-24099664 Phaseolus vulgaris
Phvul.009G162200 0.5kb downstream 0.5kb downstream 500 false Chr09: 24099165-24099664 Phaseolus vulgaris
Phvul.009G162200 1.0kb upstream 1.0kb upstream 7651 true Chr09: 24091514-24099164 Phaseolus vulgaris
Phvul.009G162200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 24091514-24092513 Phaseolus vulgaris
Phvul.009G162200 1.0kb downstream 1.0kb downstream 7651 true Chr09: 24092514-24100164 Phaseolus vulgaris
Phvul.009G162200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 24099165-24100164 Phaseolus vulgaris
Phvul.009G162200 2.0kb upstream 2.0kb upstream 8651 true Chr09: 24090514-24099164 Phaseolus vulgaris
Phvul.009G162200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 24090514-24092513 Phaseolus vulgaris
Phvul.009G162200 2.0kb downstream 2.0kb downstream 8651 true Chr09: 24092514-24101164 Phaseolus vulgaris
Phvul.009G162200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 24099165-24101164 Phaseolus vulgaris
Phvul.009G162200 5.0kb upstream 5.0kb upstream 11651 true Chr09: 24087514-24099164 Phaseolus vulgaris
Phvul.009G162200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 24087514-24092513 Phaseolus vulgaris
Phvul.009G162200 5.0kb downstream 5.0kb downstream 11651 true Chr09: 24092514-24104164 Phaseolus vulgaris
Phvul.009G162200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 24099165-24104164 Phaseolus vulgaris
Phvul.009G162200 10.0kb upstream 10.0kb upstream 16651 true Chr09: 24082514-24099164 Phaseolus vulgaris
Phvul.009G162200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 24082514-24092513 Phaseolus vulgaris
Phvul.009G162200 10.0kb downstream 10.0kb downstream 16651 true Chr09: 24092514-24109164 Phaseolus vulgaris
Phvul.009G162200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 24099165-24109164 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301714 5265 Fabidae View MSA
124072894 5270 Rosid View MSA
123748946 5271 Pentapetalae View MSA
122791456 5272 Eudicot View MSA
122042773 5273 Angiosperm View MSA
121346519 5274 Embryophyte View MSA
123426401 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.5605 0.0 40.221   Low
cufflinks 40.2319 0.0 108.236 High High
cufflinks 20.1796 0.0 52.3032    
cufflinks 11.2427 0.0 29.2799   Low
cufflinks 20.7165 0.0 53.6199    
cufflinks 33.5872 0.0 89.2489 High  
cufflinks 31.9617 0.0 84.8796 High  
cufflinks 33.9801 0.0 90.6015 High  
cufflinks 28.4611 0.0 75.0117    
cufflinks 32.7004 0.0 86.3977    
cufflinks 25.0175 0.0 65.1813    

0 Strain