Gene : Phvul.008G027800 P. vulgaris v2.1
Defline:  (1 of 3) PTHR11945:SF155 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL8-RELATED Genomic Order:  285
Name:  ? Phvul.008G027800 Secondary Identifier:  ? PAC:37158209
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G027800 0.5kb upstream 0.5kb upstream 8418 true Chr08: 2232306-2240723 Phaseolus vulgaris
Phvul.008G027800 0.5kb upstream 0.5kb upstream 500 false Chr08: 2240224-2240723 Phaseolus vulgaris
Phvul.008G027800 0.5kb downstream 0.5kb downstream 8418 true Chr08: 2231806-2240223 Phaseolus vulgaris
Phvul.008G027800 0.5kb downstream 0.5kb downstream 500 false Chr08: 2231806-2232305 Phaseolus vulgaris
Phvul.008G027800 1.0kb upstream 1.0kb upstream 8918 true Chr08: 2232306-2241223 Phaseolus vulgaris
Phvul.008G027800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2240224-2241223 Phaseolus vulgaris
Phvul.008G027800 1.0kb downstream 1.0kb downstream 8918 true Chr08: 2231306-2240223 Phaseolus vulgaris
Phvul.008G027800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2231306-2232305 Phaseolus vulgaris
Phvul.008G027800 2.0kb upstream 2.0kb upstream 9918 true Chr08: 2232306-2242223 Phaseolus vulgaris
Phvul.008G027800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2240224-2242223 Phaseolus vulgaris
Phvul.008G027800 2.0kb downstream 2.0kb downstream 9918 true Chr08: 2230306-2240223 Phaseolus vulgaris
Phvul.008G027800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2230306-2232305 Phaseolus vulgaris
Phvul.008G027800 5.0kb upstream 5.0kb upstream 12918 true Chr08: 2232306-2245223 Phaseolus vulgaris
Phvul.008G027800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2240224-2245223 Phaseolus vulgaris
Phvul.008G027800 5.0kb downstream 5.0kb downstream 12918 true Chr08: 2227306-2240223 Phaseolus vulgaris
Phvul.008G027800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2227306-2232305 Phaseolus vulgaris
Phvul.008G027800 10.0kb upstream 10.0kb upstream 17918 true Chr08: 2232306-2250223 Phaseolus vulgaris
Phvul.008G027800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2240224-2250223 Phaseolus vulgaris
Phvul.008G027800 10.0kb downstream 10.0kb downstream 17918 true Chr08: 2222306-2240223 Phaseolus vulgaris
Phvul.008G027800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2222306-2232305 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041064 5273 Angiosperm View MSA
122314774 5265 Fabidae View MSA
124072328 5270 Rosid View MSA
123751710 5271 Pentapetalae View MSA
122788972 5272 Eudicot View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.406984 0.0 1.59005 Low  
cufflinks 0.956909 0.0 4.46176    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.170652 0.0 0.71525 Low Low
cufflinks 1.58542 0.0 6.65546    
cufflinks 0.405705 0.0 1.59885 Low  
cufflinks 4.13901 0.0 17.4324   High
cufflinks 3.90726 0.0 17.0425   High
cufflinks 2.50921 0.0 12.6112    
cufflinks 0.997006 0.0 6.16031    
cufflinks 0.886302 0.0 5.53383    

0 Strain