Gene : Phvul.008G019600 P. vulgaris v2.1
Defline:  (1 of 180) PF00847 - AP2 domain (AP2) Genomic Order:  197
Name:  ? Phvul.008G019600 Secondary Identifier:  ? PAC:37157644
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G019600 0.5kb upstream 0.5kb upstream 5254 true Chr08: 1642256-1647509 Phaseolus vulgaris
Phvul.008G019600 0.5kb upstream 0.5kb upstream 500 false Chr08: 1642256-1642755 Phaseolus vulgaris
Phvul.008G019600 0.5kb downstream 0.5kb downstream 5254 true Chr08: 1642756-1648009 Phaseolus vulgaris
Phvul.008G019600 0.5kb downstream 0.5kb downstream 500 false Chr08: 1647510-1648009 Phaseolus vulgaris
Phvul.008G019600 1.0kb upstream 1.0kb upstream 5754 true Chr08: 1641756-1647509 Phaseolus vulgaris
Phvul.008G019600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1641756-1642755 Phaseolus vulgaris
Phvul.008G019600 1.0kb downstream 1.0kb downstream 5754 true Chr08: 1642756-1648509 Phaseolus vulgaris
Phvul.008G019600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1647510-1648509 Phaseolus vulgaris
Phvul.008G019600 2.0kb upstream 2.0kb upstream 6754 true Chr08: 1640756-1647509 Phaseolus vulgaris
Phvul.008G019600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1640756-1642755 Phaseolus vulgaris
Phvul.008G019600 2.0kb downstream 2.0kb downstream 6754 true Chr08: 1642756-1649509 Phaseolus vulgaris
Phvul.008G019600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1647510-1649509 Phaseolus vulgaris
Phvul.008G019600 5.0kb upstream 5.0kb upstream 9754 true Chr08: 1637756-1647509 Phaseolus vulgaris
Phvul.008G019600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1637756-1642755 Phaseolus vulgaris
Phvul.008G019600 5.0kb downstream 5.0kb downstream 9754 true Chr08: 1642756-1652509 Phaseolus vulgaris
Phvul.008G019600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1647510-1652509 Phaseolus vulgaris
Phvul.008G019600 10.0kb upstream 10.0kb upstream 14754 true Chr08: 1632756-1647509 Phaseolus vulgaris
Phvul.008G019600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1632756-1642755 Phaseolus vulgaris
Phvul.008G019600 10.0kb downstream 10.0kb downstream 14754 true Chr08: 1642756-1657509 Phaseolus vulgaris
Phvul.008G019600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1647510-1657509 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308061 5265 Fabidae View MSA
124066336 5270 Rosid View MSA
123738073 5271 Pentapetalae View MSA
122789741 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.73082 0.0 8.89492    
cufflinks 6.64674 0.0 19.4768    
cufflinks 0.670576 0.0 2.50329   Low
cufflinks 4.22701 0.0 13.0031    
cufflinks 1.92002 0.0 6.5454    
cufflinks 2.33787 0.0 7.71067    
cufflinks 10.5608 0.0 29.3621   High
cufflinks 3.31984 0.0 10.4594    
cufflinks 7.83883 0.0 22.35   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.54082 0.0 5.36565    

0 Strain